EY666422

Overview
NameEY666422
Unique NameEY666422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666422 vs. ExPASy Swiss-Prot
Match: YD56_SCHPO (Putative phospholipid-transporting ATPase C6C3.06c OS=Schizosaccharomyces pombe GN=SPAC6C3.06c PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 58/178 (32.58%), Postives = 96/178 (53.93%), Query Frame = 3
Query:   57 LAGDCSVVLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMSSDFAMGQFRFLVTLLLVHGHWNYQRMGYMILYNFYRNAXXXXXXXXXXXXTAFTLTTAINEWSSVLYSVIYTSLPTIVVAILDKDLSRRTLLQNPQLYGAGHRQECYNTKLF 590
            +  D S V+ CR  P QKA +  L++ +       IGDG NDV MIQ+A+VG+GI G+EG+QA +++D+++ +F  +  LLL HG  +Y++   + ++  +R              +AF           V YS +YT LP   + + D+D+S + +   P+LY     Q+C++ K F
Sbjct:  733 IVSDLSSVVICRCTPTQKANMTRLIQEKKQASVCCIGDGGNDVGMIQVANVGIGIVGKEGQQASLAADYSVKEFSHVSRLLLWHGRISYKQTSKLAMFVIHRGLLISVCQVVYSVISAFEPIALFQGLLLVGYSTMYTMLPVFSI-VYDRDVSEKLVFLFPELYKEMREQKCFSYKNF 909          
BLAST of EY666422 vs. ExPASy Swiss-Prot
Match: ATC7_YEAST (Probable phospholipid-transporting ATPase NEO1 OS=Saccharomyces cerevisiae GN=NEO1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.953e-21
Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 3
Query:   78 VLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMSSDFAMGQFRFLVTLLLVHGHWNYQRMGYMILYNFYRNAXXXXXXXXXXXXTAFTLTTAINEWSSVLYSVIYTSLPTIVVAILDKDLSRRTLLQNPQLYG--AGHRQECYNTKLFWLTMA 605
            V+ CR  P QKA +  +++  T      IGDG NDVSMIQ ADVGVGI G+EG+QA +++DF++ QF  L  LLL HG  +Y+R   +  +  +R              + F        W  V Y+  YT  P   +  LD D+        P+LY      +   Y T   W+ ++
Sbjct:  852 VIACRCTPQQKADVALVIRKMTGKRVCCIGDGGNDVSMIQCADVGVGIVGKEGKQASLAADFSITQFCHLTELLLWHGRNSYKRSAKLAQFVMHRGLIIAICQAVYSICSLFEPIALYQGWLMVGYATCYTMAPVFSLT-LDHDIEESLTKIYPELYKELTEGKSLSYKTFFVWVLLS 1028          
The following BLAST results are available for this feature:
BLAST of EY666422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
YD56_SCHPO2.186e-2332.58Putative phospholipid-transporting ATPase C6C3.06c... [more]
ATC7_YEAST5.953e-2133.71Probable phospholipid-transporting ATPase NEO1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666422 ID=EY666422; Name=EY666422; organism=Citrus sinensis; type=EST; length=888bp
CACACAGCGGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGAACAGCT
TTTCCATTAGCTGGAGACTGCTCTGTTGTACTTTGTTGCCGAGTAGCACC
GTTGCAAAAAGCTGGGATTGTTGCCCTTGTAAAGACCAGGACATCAGACA
TGACCCTTGCGATTGGGGATGGTGCAAATGATGTTTCAATGATTCAAATG
GCTGATGTTGGAGTTGGCATAAGCGGCCAAGAGGGTCGGCAAGCTGTAAT
GTCATCGGATTTTGCAATGGGGCAGTTTAGATTCTTAGTTACACTTTTGT
TGGTCCATGGGCATTGGAATTATCAGCGGATGGGCTACATGATATTGTAC
AACTTTTACAGAAATGCAGTGCTTGTTTTTGTTCTATTTTGGTATGTGCT
ATTTACTGCTTTCACTTTGACAACTGCAATTAATGAGTGGAGCAGTGTGT
TATATTCTGTGATCTACACTTCTTTGCCTACAATTGTTGTTGCTATACTT
GACAAGGACCTTAGTAGAAGGACTCTTCTACAGAATCCCCAGCTCTATGG
GGCTGGGCACAGACAAGAGTGCTATAACACAAAATTGTTTTGGCTGACAA
TGGCTGATAACATTGGGGCAAAGTGTGGGTGATCTTTTTTATTTCTTTTT
GGAGCGCACCTGGGAACCCACCCTTGTTGTCATCAAGTATTAGGGGAATT
GGGGATCCCTTGCCTGGCTGTAATTTAGGGTAATTACAGACTCTGGTTAC
GGGAGGCCACCGCCAGAGATTCGGACTAAACCAGTGCACACCTTTCGGAC
ACCACATAACTAGCCACAGTGACTTGGGTGACAGGGTAAATATAGCAGTG
CTACACTTCACTTATACCGGCTTTCTCGGGACCCCTCT
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