CN184530

Overview
NameCN184530
Unique NameCN184530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_LACRD (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain DSM 20016) GN=metK PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.180e-42
Identity = 84/143 (58.74%), Postives = 105/143 (73.43%), Query Frame = 3
Query:    6 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETPEFM 416
            E  LFTSESV+EGHPDK+ DQISDA+LD  L++DP+S+VA ET   T +V+VFGE++TKA V+ ++IVRDT R IG+     G DAD+C V+  I++QSPDIAQGV      R       + IGAGDQG MFGYATDETPE+M
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGEADPLDKIGAGDQGLMFGYATDETPEYM 145          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_ALISL (S-adenosylmethionine synthetase OS=Aliivibrio salmonicida (strain LFI1238) GN=metK PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.180e-42
Identity = 87/134 (64.93%), Postives = 103/134 (76.87%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MVMV GE+TT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV     + P++ GAGDQG MFGYAT+ETP  M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRETVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVD---KEDPKEQGAGDQGIMFGYATNETPILM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_PSEA6 (S-adenosylmethionine synthetase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=metK PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.068e-41
Identity = 87/134 (64.93%), Postives = 101/134 (75.37%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA L+QDP+++VACET  KT MVMV GE+TT A VD E++ R+T R IG+   D+G DAD C VL  I +QSPDI QGV      RPED GAGDQG MFGYA+DET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKARVACETYVKTGMVMVGGEVTTNAWVDIEELTRNTVREIGYTHSDMGFDADSCAVLNAIGKQSPDINQGVD---RTRPEDQGAGDQGLMFGYASDETDVLM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_VIBFM (S-adenosylmethionine synthetase OS=Vibrio fischeri (strain MJ11) GN=metK PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.395e-41
Identity = 87/134 (64.93%), Postives = 102/134 (76.12%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MVMV GE+TT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P++ GAGDQG MFGYAT+ETP  M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRETVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVD---KADPKEQGAGDQGIMFGYATNETPILM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_VIBF1 (S-adenosylmethionine synthetase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=metK PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.395e-41
Identity = 87/134 (64.93%), Postives = 102/134 (76.12%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MVMV GE+TT A VD E+I R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P++ GAGDQG MFGYAT+ETP  M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRETVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVD---KADPKEQGAGDQGIMFGYATNETPILM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_PROM1 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL1A) GN=metK PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.822e-41
Identity = 82/139 (58.99%), Postives = 105/139 (75.54%), Query Frame = 3
Query:   12 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS-DDVGLDADHCKVLVNIEQQSPDIAQGVH---GHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            ++FTSESV EGHPDK+CDQ+SDAVLDACL +DP S+VACE    T + ++ GEIT+KA+VD+ K+VR+  +SIG+ S  D G DA+ C VLV ++QQS DIAQGV+    H T   + +GAGDQG MFG+A DETPE M
Sbjct:    4 YVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKSIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVGAGDQGIMFGFACDETPELM 142          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_LACSS (S-adenosylmethionine synthetase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=metK PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.822e-41
Identity = 82/143 (57.34%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    6 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPED------IGAGDQGHMFGYATDETPEFM 416
            E  LFTSESV+EGHPDK+ DQISDA+LDA LEQDP+++VACET   T +V+V GEI+T A VD +K+VR+T + IG+     G D D+C V+V +++QSPDIAQGV      R +D      IGAGDQG MFG+A D+TPE M
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDAMLEQDPQARVACETTVTTGLVLVVGEISTTAYVDIQKVVRETIKKIGYRDGQYGFDGDNCAVIVALDEQSPDIAQGVDDSLESREKDEDPLDKIGAGDQGLMFGFAVDQTPELM 145          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_PHOPR (S-adenosylmethionine synthetase OS=Photobacterium profundum GN=metK PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.380e-41
Identity = 86/134 (64.18%), Postives = 103/134 (76.87%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MVMV GEITT A VD E+I R+T R IG+V+ ++G DA+ C VL  I +QSPDI QGV     + P ++GAGDQG MFGYA+DET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEEITRETIREIGYVNSEMGFDANSCAVLSAIGKQSPDINQGVD---REDPRELGAGDQGIMFGYASDETDVLM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_PROMT (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=metK PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.060e-41
Identity = 81/139 (58.27%), Postives = 105/139 (75.54%), Query Frame = 3
Query:   12 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS-DDVGLDADHCKVLVNIEQQSPDIAQGVH---GHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            ++FTSESV EGHPDK+CDQ+SDAVLDACL +DP S+VACE    T + ++ GEIT+KA+VD+ K+VR+  ++IG+ S  D G DA+ C VLV ++QQS DIAQGV+    H T   + +GAGDQG MFG+A DETPE M
Sbjct:    4 YVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKNIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVGAGDQGIMFGFACDETPELM 142          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_PROMH (S-adenosylmethionine synthetase OS=Proteus mirabilis (strain HI4320) GN=metK PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.925e-41
Identity = 88/136 (64.71%), Postives = 101/136 (74.26%), Query Frame = 3
Query:    9 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            T LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MVMV GEITTKA VD E+I R T R IG+ S D+G DA+ C V+  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   M
Sbjct:    3 THLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTKAWVDIEEITRKTVREIGYTSSDMGFDANSCAVISAIGKQSPDINQGVD---RADPLEQGAGDQGLMFGYATNETDVLM 135          
The following BLAST results are available for this feature:
BLAST of CN184530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LACRD8.180e-4258.74S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_ALISL8.180e-4264.93S-adenosylmethionine synthetase OS=Aliivibrio salm... [more]
METK_PSEA61.068e-4164.93S-adenosylmethionine synthetase OS=Pseudoalteromon... [more]
METK_VIBFM1.395e-4164.93S-adenosylmethionine synthetase OS=Vibrio fischeri... [more]
METK_VIBF11.395e-4164.93S-adenosylmethionine synthetase OS=Vibrio fischeri... [more]
METK_PROM11.822e-4158.99S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_LACSS1.822e-4157.34S-adenosylmethionine synthetase OS=Lactobacillus s... [more]
METK_PHOPR2.380e-4164.18S-adenosylmethionine synthetase OS=Photobacterium ... [more]
METK_PROMT4.060e-4158.27S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROMH6.925e-4164.71S-adenosylmethionine synthetase OS=Proteus mirabil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184530 ID=CN184530; Name=CN184530; organism=Citrus sinensis; type=EST; length=418bp
AGACGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCC
GACAAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGATGCCTGCCTTGA
GCAGGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACA
TGGTCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAG
AAGATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGT
GGGTCTTGATGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAA
GCCCTGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAG
GACATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGA
GACCCCTGAATTTATGCC
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