CN184530

Overview
NameCN184530
Unique NameCN184530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_VIBVY (S-adenosylmethionine synthetase OS=Vibrio vulnificus (strain YJ016) GN=metK PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.862e-40
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MVMV GEITT A VD E++ R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P++ GAGDQG MFGYA +ET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRETVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVD---KADPKEQGAGDQGIMFGYACNETEVLM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_VIBVU (S-adenosylmethionine synthetase OS=Vibrio vulnificus GN=metK PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.862e-40
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MVMV GEITT A VD E++ R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P++ GAGDQG MFGYA +ET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRETVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVD---KADPKEQGAGDQGIMFGYACNETEVLM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_VIBPA (S-adenosylmethionine synthetase OS=Vibrio parahaemolyticus GN=metK PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.862e-40
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MVMV GEITT A VD E++ R+T R IG+V  D+G DA+ C VL  I +QSPDI QGV       P++ GAGDQG MFGYA +ET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRETVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVD---KADPKEQGAGDQGIMFGYACNETEVLM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_RHOBA (S-adenosylmethionine synthetase OS=Rhodopirellula baltica GN=metK PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.862e-40
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 3
Query:   12 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            FLFTSESV+ GHPDKL D+ISD++LDA L QDP S+VACET   T + ++ GEI++KA VDYEKIVRDT  ++G+   D+G+D   C+V + ++ QSPDIAQGV+       +DIGAGDQG MFGYA  +TPE M
Sbjct:    8 FLFTSESVSMGHPDKLADRISDSILDALLAQDPHSRVACETLVTTGLAVIAGEISSKADVDYEKIVRDTIVAVGYDDPDIGIDGKTCEVQIRLDAQSPDIAQGVNSD-EASGKDIGAGDQGLMFGYACKDTPELM 141          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_METFK (S-adenosylmethionine synthetase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=metK PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.862e-40
Identity = 82/135 (60.74%), Postives = 102/135 (75.56%), Query Frame = 3
Query:   12 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            +LFTSESV+EGHPDK+ DQISD++LDA LEQDP ++VA ET T T +V++ GEITT A VDY KI RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV+ +    P D GAGDQG MFGYA DETP+ +
Sbjct:    4 YLFTSESVSEGHPDKVADQISDSILDAILEQDPTARVAAETLTNTGLVVLAGEITTTANVDYIKIARDTIKRIGYDNADYGIDYKSCAVLVAYDKQSPDIAQGVN-NANDDPLDQGAGDQGLMFGYACDETPQLL 137          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_YERPY (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=metK PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.657e-40
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GE+TT A VD E+I R T R IG+V  D+G DA+ C VL  I +QSPDI QGV     + P + GAGDQG MFGYAT+ET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEVTTNAWVDIEEITRRTIREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RENPLEQGAGDQGLMFGYATNETSVLM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_YERPS (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis GN=metK PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.657e-40
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GE+TT A VD E+I R T R IG+V  D+G DA+ C VL  I +QSPDI QGV     + P + GAGDQG MFGYAT+ET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEVTTNAWVDIEEITRRTIREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RENPLEQGAGDQGLMFGYATNETSVLM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_YERPP (S-adenosylmethionine synthetase OS=Yersinia pestis (strain Pestoides F) GN=metK PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.657e-40
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GE+TT A VD E+I R T R IG+V  D+G DA+ C VL  I +QSPDI QGV     + P + GAGDQG MFGYAT+ET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEVTTNAWVDIEEITRRTIREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RENPLEQGAGDQGLMFGYATNETSVLM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_YERPN (S-adenosylmethionine synthetase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=metK PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.657e-40
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GE+TT A VD E+I R T R IG+V  D+G DA+ C VL  I +QSPDI QGV     + P + GAGDQG MFGYAT+ET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEVTTNAWVDIEEITRRTIREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RENPLEQGAGDQGLMFGYATNETSVLM 135          
BLAST of CN184530 vs. ExPASy Swiss-Prot
Match: METK_YERPG (S-adenosylmethionine synthetase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=metK PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.657e-40
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   15 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFM 416
            LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MV+V GE+TT A VD E+I R T R IG+V  D+G DA+ C VL  I +QSPDI QGV     + P + GAGDQG MFGYAT+ET   M
Sbjct:    5 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEVTTNAWVDIEEITRRTIREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RENPLEQGAGDQGLMFGYATNETSVLM 135          
The following BLAST results are available for this feature:
BLAST of CN184530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_VIBVY5.862e-4063.43S-adenosylmethionine synthetase OS=Vibrio vulnific... [more]
METK_VIBVU5.862e-4063.43S-adenosylmethionine synthetase OS=Vibrio vulnific... [more]
METK_VIBPA5.862e-4063.43S-adenosylmethionine synthetase OS=Vibrio parahaem... [more]
METK_RHOBA5.862e-4058.52S-adenosylmethionine synthetase OS=Rhodopirellula ... [more]
METK_METFK5.862e-4060.74S-adenosylmethionine synthetase OS=Methylobacillus... [more]
METK_YERPY7.657e-4063.43S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]
METK_YERPS7.657e-4063.43S-adenosylmethionine synthetase OS=Yersinia pseudo... [more]
METK_YERPP7.657e-4063.43S-adenosylmethionine synthetase OS=Yersinia pestis... [more]
METK_YERPN7.657e-4063.43S-adenosylmethionine synthetase OS=Yersinia pestis... [more]
METK_YERPG7.657e-4063.43S-adenosylmethionine synthetase OS=Yersinia pestis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005K14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184530 ID=CN184530; Name=CN184530; organism=Citrus sinensis; type=EST; length=418bp
AGACGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCC
GACAAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGATGCCTGCCTTGA
GCAGGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACA
TGGTCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAG
AAGATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGT
GGGTCTTGATGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAA
GCCCTGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAG
GACATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGA
GACCCCTGAATTTATGCC
back to top