CN184525

Overview
NameCN184525
Unique NameCN184525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.915e-23
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CG V+G +APCI +L       P  CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   29 CGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.807e-23
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CGQV   LAPC+ +L+  GR P   CC GV+ L GAA++  DR+ AC CLK A  +I GI+   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   27 CGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.807e-23
Identity = 52/90 (57.78%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CG V+G +APCI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   29 CGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.972e-23
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CG V+G+L PC+ +L+ GG  P P CC GV+ LNGAARTT DR+AACNCLK +  SI G+     A LP +CGV +PY IS +T+C+ +R
Sbjct:   29 CGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.493e-23
Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            CG V   LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  SI GIN   AA LPRQCGVS+PY ISPNT+C+ +
Sbjct:   29 CGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.493e-23
Identity = 52/90 (57.78%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CG V+G+LA CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   29 CGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.108e-22
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CG V+G+LA CI +L   G  P   CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   29 CGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.447e-22
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            CG V+  LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A  +I GIN   AAGLP  CGV IPY ISP+T+C+ V
Sbjct:   30 CGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.447e-22
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CG V+G+LA CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   29 CGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.889e-22
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CG V  ++APCI ++  GG  P   CC GV  LN  ARTTPDRQ AC CL+ A R++ P +NA  AAG+P+ CGVS+P+ IS NT+C+ V+
Sbjct:   29 CGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
The following BLAST results are available for this feature:
BLAST of CN184525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTPD_BRAOT2.915e-2355.56Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP2_TOBAC3.807e-2356.67Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_BRANA3.807e-2357.78Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_LENCU4.972e-2354.44Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP_BETVU6.493e-2356.18Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTPB_BRAOT6.493e-2357.78Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP3_BRANA1.108e-2256.67Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP_SPIOL1.447e-2256.18Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP1_BRANA1.447e-2256.67Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTPA_BRAOT1.889e-2252.75Non-specific lipid-transfer protein A OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184525 ID=CN184525; Name=CN184525; organism=Citrus sinensis; type=EST; length=511bp
GAGGTAAGGGAGAATTTTTAAGATAATACCACAAAATAACTAGAATTAAT
CACTCAAAACACAGATCACGTTTACATATTTAATATGATATTAAAAGCAA
AGATACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGACTCGTTC
GGACAAAGAAATTAACATATATATTCTTTATTTATTTATTCTTCTCAGTC
AATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCTGACCCTA
GAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTCCACATTG
ACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGATTGATCGGT
AAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTG
GCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTGGAGGAAA
ACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAGCCTGTCA
CCTGCCCACAT
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