CN184525

Overview
NameCN184525
Unique NameCN184525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184525_ssr177 microsatellite CN184525_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:296..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.016e-20
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+ A +++ PG+N   AAGLP  C V+IPYKIS +T+C+ VR
Sbjct:   29 CGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.146e-19
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            CGQV+ +L PC A+ +  G  P   CC+GV+ L G AR+T D+QA C CLK    S+ G  NA  AAG+P +CGVS+PY IS + DCS++
Sbjct:   29 CGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLK----SVAGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.355e-19
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            C  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    4 CTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.355e-19
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            C  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    4 CTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.429e-19
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A + I G+N ++ A LP  CGVSIPY IS +T+C  +
Sbjct:   28 CGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.655e-18
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   32 CGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.655e-18
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   32 CGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.655e-18
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I  +N + A  +P +CGV++PY IS N DCSRV
Sbjct:   26 CGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.073e-17
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ ACNCLK    +IPGIN + A  LP +CGV+I    S   DC+ +
Sbjct:   31 CPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.076e-17
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++   +NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:   29 CGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CN184525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP2_ARATH3.016e-2053.85Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP8_HORVU1.146e-1950.00Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP_AMACA4.355e-1948.35Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP4.355e-1948.35Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPC_ARATH7.429e-1949.44Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_ORYSJ1.655e-1843.82Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.655e-1843.82Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT1.655e-1847.19Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTPB_ARATH1.073e-1748.31Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP5_ARATH4.076e-1751.65Non-specific lipid-transfer protein 5 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184525 ID=CN184525; Name=CN184525; organism=Citrus sinensis; type=EST; length=511bp
GAGGTAAGGGAGAATTTTTAAGATAATACCACAAAATAACTAGAATTAAT
CACTCAAAACACAGATCACGTTTACATATTTAATATGATATTAAAAGCAA
AGATACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGACTCGTTC
GGACAAAGAAATTAACATATATATTCTTTATTTATTTATTCTTCTCAGTC
AATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCTGACCCTA
GAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTCCACATTG
ACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGATTGATCGGT
AAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTG
GCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTGGAGGAAA
ACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAGCCTGTCA
CCTGCCCACAT
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