CN184514
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_SCHPO (Mediator of RNA polymerase II transcription subunit 6 OS=Schizosaccharomyces pombe GN=med6 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.338e-16 Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1 Query: 1 PPGTDMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLDI----SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEK 414 PP D+T I +R W+ + L + +YF+ S FY NNE L+M+S + LD+ SQL ++TGI++++ P L+VI+KQ R +V P+ Y+V + +IY AP + + R+ A + QKA T K+EK Sbjct: 6 PPSVDLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALT----KIEK 145
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_USTMA (Mediator of RNA polymerase II transcription subunit 6 OS=Ustilago maydis GN=MED6 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 7.400e-16 Identity = 41/124 (33.06%), Postives = 71/124 (57.26%), Query Frame = 1 Query: 58 YPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH------------PLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 393 +PL + + YF S F+DR NNEQ+RM++I + +L + TG+E++L EP FV++K+ R P + TP+ YYV++ SIYQAP L ++ + R+ ++ ++ + +T Sbjct: 53 HPLTEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLSGGMGAKQEEQELKRFTGLEFVLVHSREPTCFVVQKRWRTSPTETTPLAAYYVINDSIYQAPDLYSILATRLQSTVYALRMSLST 176
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_DEBHA (Mediator of RNA polymerase II transcription subunit 6 OS=Debaryomyces hansenii GN=MED6 PE=3 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15 Identity = 44/120 (36.67%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 25 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDI--SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354 I +++ W+ + L + DYF+ S FYDRT NN+ LRM+ +I+P S+L +MTGIE++++ EP ++IRKQ R P++V YY++ +IYQAP++ ++ S+R+ Sbjct: 9 IQWKNPEWIQQFGLFTGNVLDYFSESPFYDRTSNNQVLRMQFQFQQIPPNINPQKYLQSKLVEMTGIEFIIAASREPDFWIIRKQTRLSPKQVNIEQDYYIIGANIYQAPKVYDILSSRL 128
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_KLULA (Mediator of RNA polymerase II transcription subunit 6 OS=Kluyveromyces lactis GN=MED6 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.823e-14 Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 1 Query: 46 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS------------------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354 W+ T+ L + + DYF+ S F+D+T NN+ ++M+ +H + +L KM GIEY+L V EP L++IRKQ+RDGP K T + YYV+ ++YQ+P + + R+ Sbjct: 16 WIQTFGLHTDNVLDYFSESPFFDKTSNNQVVKMQQQFSQQSQVPGSMPLGSSSGIGAAAGAGTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVLVREPDLWIIRKQQRDGPTKTTTLRDYYVIGSAVYQSPTVYKIIQNRL 160
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_CAEEL (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis elegans GN=mdt-6 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12 Identity = 41/124 (33.06%), Postives = 76/124 (61.29%), Query Frame = 1 Query: 25 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 387 + FR+ W + ++++ + DYF + FY+ N+Q+RM++I + + L M GI+Y+L +P LF+I KQ+R+ V+P+ YYV++GS++QAP + ++ +R+ AL ++ AF Sbjct: 19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGIQYVLW-YSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPLRNAF 140
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_CAEBR (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis briggsae GN=mdt-6 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12 Identity = 39/122 (31.97%), Postives = 75/122 (61.48%), Query Frame = 1 Query: 31 FRDQLWLNTYPLDRNMIFDYFTL--SLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 387 FR+ W + ++R+ + DYF ++FY+ N+Q++M++I + + L M GI+Y+L +P L+++ KQ+R+ V+P+ YYV++GS++QAP + + +R+ AL ++ AF Sbjct: 21 FRNPQWPANF-INRDNVLDYFCNQGNVFYEMNSCNQQIKMQNITNRSVDECLRNMQGIQYVLW-YSQPPLYIVCKQRRNNATNVSPIAYYYVINGSVHQAPDMHTLVQSRLLGALEPLRNAF 140
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_ENCCU (Mediator of RNA polymerase II transcription subunit 6 OS=Encephalitozoon cuniculi GN=MED6 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.964e-12 Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 1 Query: 25 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLD-ISQLSKMTGIEYML-SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 366 I F DQ +L + PLD + +YF+ S FYD++CNNE L+M++ LD S+L M GI Y + S E LFVIRK G T + YY++ G +Y AP +++ R+G ++ Sbjct: 8 ISFVDQRFLGSKPLDDTNVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLFSMVGIFYEVESSNHEKTLFVIRKAYNHGDTAET-LGMYYIIHGHVYAAPTNYSIYRCRMGDSM 123
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_PICST (Mediator of RNA polymerase II transcription subunit 6 OS=Pichia stipitis GN=MED6 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12 Identity = 34/104 (32.69%), Postives = 61/104 (58.65%), Query Frame = 1 Query: 79 IFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354 + +YF+LS FYDRT NN+QL M+ + +L +MTG+ ++++ EP ++IRKQ + P+ + YY++ ++YQAP++ +V S+R+ Sbjct: 27 VLEYFSLSPFYDRTSNNQQLMMQFQFQQIQIPVNTTFQQFFQEKLREMTGVVFVIAYNREPDFWIIRKQLQLDPQNAVTLQDYYIIGANVYQAPKVYDVLSSRL 130
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_ASHGO (Mediator of RNA polymerase II transcription subunit 6 OS=Ashbya gossypii GN=MED6 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11 Identity = 39/134 (29.10%), Postives = 68/134 (50.75%), Query Frame = 1 Query: 46 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354 W+ ++ L + + DYF+ S F+D+T NN ++M+ + L +L+K+ GIEY+L+ V EP +V+RKQ+R G ++VT + YY++ ++YQAP +V R+ Sbjct: 16 WIQSFGLRTDNVLDYFSQSPFFDKTSNNHVVKMQQQFSQQMPPAPQTARPKAAPSAERQAIWDRYPAYALLEQELAKLKGIEYVLAHVREPDFWVVRKQRRAG-DRVTALNDYYIIGANVYQAPTAYSVVQNRL 148 The following BLAST results are available for this feature:
BLAST of CN184514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184514 ID=CN184514; Name=CN184514; organism=Citrus sinensis; type=EST; length=563bpback to top |