CN184514

Overview
NameCN184514
Unique NameCN184514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_SCHPO (Mediator of RNA polymerase II transcription subunit 6 OS=Schizosaccharomyces pombe GN=med6 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.338e-16
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 PPGTDMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLDI----SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEK 414
            PP  D+T I +R   W+ +   L    + +YF+ S FY    NNE L+M+S  + LD+    SQL ++TGI++++     P L+VI+KQ R    +V P+  Y+V + +IY AP    + + R+  A +  QKA T    K+EK
Sbjct:    6 PPSVDLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALT----KIEK 145          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_USTMA (Mediator of RNA polymerase II transcription subunit 6 OS=Ustilago maydis GN=MED6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.400e-16
Identity = 41/124 (33.06%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   58 YPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH------------PLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 393
            +PL  + +  YF  S F+DR  NNEQ+RM++I               +  +L + TG+E++L    EP  FV++K+ R  P + TP+  YYV++ SIYQAP L ++ + R+   ++ ++ + +T
Sbjct:   53 HPLTEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLSGGMGAKQEEQELKRFTGLEFVLVHSREPTCFVVQKRWRTSPTETTPLAAYYVINDSIYQAPDLYSILATRLQSTVYALRMSLST 176          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_DEBHA (Mediator of RNA polymerase II transcription subunit 6 OS=Debaryomyces hansenii GN=MED6 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15
Identity = 44/120 (36.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:   25 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDI--SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354
            I +++  W+  + L    + DYF+ S FYDRT NN+ LRM+        +I+P     S+L +MTGIE++++   EP  ++IRKQ R  P++V     YY++  +IYQAP++ ++ S+R+
Sbjct:    9 IQWKNPEWIQQFGLFTGNVLDYFSESPFYDRTSNNQVLRMQFQFQQIPPNINPQKYLQSKLVEMTGIEFIIAASREPDFWIIRKQTRLSPKQVNIEQDYYIIGANIYQAPKVYDILSSRL 128          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_KLULA (Mediator of RNA polymerase II transcription subunit 6 OS=Kluyveromyces lactis GN=MED6 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.823e-14
Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 1
Query:   46 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS------------------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354
            W+ T+ L  + + DYF+ S F+D+T NN+ ++M+                                           +H +   +L KM GIEY+L  V EP L++IRKQ+RDGP K T +  YYV+  ++YQ+P +  +   R+
Sbjct:   16 WIQTFGLHTDNVLDYFSESPFFDKTSNNQVVKMQQQFSQQSQVPGSMPLGSSSGIGAAAGAGTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVLVREPDLWIIRKQQRDGPTKTTTLRDYYVIGSAVYQSPTVYKIIQNRL 160          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_CAEEL (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis elegans GN=mdt-6 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 41/124 (33.06%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   25 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 387
            + FR+  W   + ++++ + DYF    + FY+    N+Q+RM++I    + + L  M GI+Y+L    +P LF+I KQ+R+    V+P+  YYV++GS++QAP + ++  +R+  AL  ++ AF
Sbjct:   19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGIQYVLW-YSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPLRNAF 140          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_CAEBR (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis briggsae GN=mdt-6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 39/122 (31.97%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   31 FRDQLWLNTYPLDRNMIFDYFTL--SLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 387
            FR+  W   + ++R+ + DYF    ++FY+    N+Q++M++I    + + L  M GI+Y+L    +P L+++ KQ+R+    V+P+  YYV++GS++QAP +  +  +R+  AL  ++ AF
Sbjct:   21 FRNPQWPANF-INRDNVLDYFCNQGNVFYEMNSCNQQIKMQNITNRSVDECLRNMQGIQYVLW-YSQPPLYIVCKQRRNNATNVSPIAYYYVINGSVHQAPDMHTLVQSRLLGALEPLRNAF 140          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_ENCCU (Mediator of RNA polymerase II transcription subunit 6 OS=Encephalitozoon cuniculi GN=MED6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.964e-12
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   25 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLD-ISQLSKMTGIEYML-SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 366
            I F DQ +L + PLD   + +YF+ S FYD++CNNE L+M++    LD  S+L  M GI Y + S   E  LFVIRK    G    T +  YY++ G +Y AP   +++  R+G ++
Sbjct:    8 ISFVDQRFLGSKPLDDTNVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLFSMVGIFYEVESSNHEKTLFVIRKAYNHGDTAET-LGMYYIIHGHVYAAPTNYSIYRCRMGDSM 123          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_PICST (Mediator of RNA polymerase II transcription subunit 6 OS=Pichia stipitis GN=MED6 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 34/104 (32.69%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   79 IFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354
            + +YF+LS FYDRT NN+QL M+            +       +L +MTG+ ++++   EP  ++IRKQ +  P+    +  YY++  ++YQAP++ +V S+R+
Sbjct:   27 VLEYFSLSPFYDRTSNNQQLMMQFQFQQIQIPVNTTFQQFFQEKLREMTGVVFVIAYNREPDFWIIRKQLQLDPQNAVTLQDYYIIGANVYQAPKVYDVLSSRL 130          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_ASHGO (Mediator of RNA polymerase II transcription subunit 6 OS=Ashbya gossypii GN=MED6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11
Identity = 39/134 (29.10%), Postives = 68/134 (50.75%), Query Frame = 1
Query:   46 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354
            W+ ++ L  + + DYF+ S F+D+T NN  ++M+                                 + L   +L+K+ GIEY+L+ V EP  +V+RKQ+R G ++VT +  YY++  ++YQAP   +V   R+
Sbjct:   16 WIQSFGLRTDNVLDYFSQSPFFDKTSNNHVVKMQQQFSQQMPPAPQTARPKAAPSAERQAIWDRYPAYALLEQELAKLKGIEYVLAHVREPDFWVVRKQRRAG-DRVTALNDYYIIGANVYQAPTAYSVVQNRL 148          
The following BLAST results are available for this feature:
BLAST of CN184514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MED6_SCHPO4.338e-1635.42Mediator of RNA polymerase II transcription subuni... [more]
MED6_USTMA7.400e-1633.06Mediator of RNA polymerase II transcription subuni... [more]
MED6_DEBHA1.649e-1536.67Mediator of RNA polymerase II transcription subuni... [more]
MED6_KLULA1.823e-1429.66Mediator of RNA polymerase II transcription subuni... [more]
MED6_CAEEL1.306e-1233.06Mediator of RNA polymerase II transcription subuni... [more]
MED6_CAEBR3.800e-1231.97Mediator of RNA polymerase II transcription subuni... [more]
MED6_ENCCU4.964e-1239.32Mediator of RNA polymerase II transcription subuni... [more]
MED6_PICST6.483e-1232.69Mediator of RNA polymerase II transcription subuni... [more]
MED6_ASHGO1.106e-1129.10Mediator of RNA polymerase II transcription subuni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005K06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184514 ID=CN184514; Name=CN184514; organism=Citrus sinensis; type=EST; length=563bp
CCACCGGGTACGGACATGACGGGGATCTGCTTCAGGGACCAATTGTGGCT
AAACACATACCCACTTGATCGAAACATGATATTTGATTACTTCACGTTGT
CTCTGTTTTATGATAGGACTTGCAACAATGAGCAGCTCAGAATGCGGTCC
ATCCACCCTCTAGACATCTCTCAACTCTCGAAAATGACTGGCATTGAATA
CATGCTTAGTGAAGTTATGGAGCCCCACCTCTTTGTTATCCGTAAGCAAA
AAAGGGATGGTCCTGAGAAAGTCACACCAATGCTCACTTATTATGTATTG
GATGGTTCAATTTACCAAGCACCACAACTTTGCAATGTCTTTTCAGCTAG
AATTGGACGGGCTCTCCACTATATACAGAAGGCTTTTACAACTGCTGCCT
CGAAGTTGGAGAAGATTGGATATGTTGATGCTGAAAATGATGGTGGTACT
CCTCTCCACTCAAAGGCTGGTAAAGAGACAATTGATTTGAAAGAAGTAAA
GCGAGTAGATCAAATACTTGCCTCCTTACAGCGCAAGCTACCACCGGCCC
CTCCACCTCCACC
back to top