CN184504

Overview
NameCN184504
Unique NameCN184504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.424e-29
Identity = 74/175 (42.29%), Postives = 105/175 (60.00%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   EN   FK LIAA+Y+G ++++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.424e-29
Identity = 75/175 (42.86%), Postives = 104/175 (59.43%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   EN   FK LIAA+Y+G +V++     +F  G TN +PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M Y   A E A   ++R L  L+ HL + T+LVG  VTLADI ++C L + +K ++
Sbjct:    1 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 171          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.428e-29
Identity = 74/175 (42.29%), Postives = 105/175 (60.00%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ HL + T+LVG  VTLADI ++C L + +K ++
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.428e-29
Identity = 74/175 (42.29%), Postives = 105/175 (60.00%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ HL + T+LVG  VTLADI ++C L + +K ++
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_BOVIN (Elongation factor 1-gamma OS=Bos taurus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.428e-29
Identity = 74/175 (42.29%), Postives = 105/175 (60.00%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ HL + T+LVG  VTLADI ++C L + +K ++
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.205e-28
Identity = 73/175 (41.71%), Postives = 105/175 (60.00%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ +L + T+LVG  VTLADI ++C L + +K ++
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.507e-28
Identity = 73/176 (41.48%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSS-LIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   +N   +K LIAA+Y+   +K+A +   F+ G+TNK+PEFLK  PLGKVP  E  +G  +FES+AIA YVA    +++L GS+  +  A V QW+ FS   +    S W++P LG MQ+   A E A   +K  L  L+ HL + T+LVG  +TLADI + C L + +K ++
Sbjct:    6 LYTYPDNWRAYKPLIAAQYSRFPIKVASSPPEFQFGLTNKTPEFLKKFPLGKVPAFEGNNGFCLFESSAIAHYVA----NDELRGSNNRLHQAQVIQWVGFSDSHVVPPASAWVFPTLGIMQFNKQATEQAKEEIKTVLGVLDCHLQTRTFLVGERITLADITLTCSLLWLYKQVL 177          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.981e-28
Identity = 74/175 (42.29%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   EN   FK  IAA+Y+G  +K+A     F  G TN+SP FL   PLGKVP  +  DG  +FESNAIA +++    ++ L GS+    A V QW+ F+  EI    S W++P LG MQ+   A E A   +KR L  LN HL + T+LVG  V+LADI ++C L + +K ++
Sbjct:    6 LYTYPENWRAFKAQIAAQYSGARLKIASASPAFTFGQTNRSPAFLSNFPLGKVPAYQGDDGFCLFESNAIAHFLS----NDALRGSTPQASAQVLQWVSFADSEIIPPASAWVFPTLGIMQFNKQATEQAKEEVKRVLAVLNQHLNTRTFLVGERVSLADITVVCSLLWLYKQVL 176          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.812e-28
Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   EN   FK  IAA+Y+G  +K+A     F  G TN+SP FL   PLGKVP  +  DG  +FESNAIA Y++    ++ L GS+    A V QW+ F+  E+    S W++P LG MQ+   A E A   +KR L  LN HL + T+LVG  ++LADI ++C L + +K ++
Sbjct:    6 LYTYPENWRAFKAQIAAQYSGARLKIASAPPAFTFGQTNRSPAFLGNFPLGKVPAYQGDDGFCLFESNAIAHYLS----NDVLRGSTPQASAQVLQWVSFADSEVIPPASAWVFPTLGIMQFNKQATEQAKEEVKRVLAVLNQHLNTRTFLVGERISLADITVVCSLLWLYKQVL 176          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.525e-23
Identity = 72/175 (41.14%), Postives = 102/175 (58.29%), Query Frame = 3
Query:  105 LHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGP-VFESNAIARYVARLKADNQLCGSSL-IDYAHVEQWMDFSAMEIDANISRWLYPRLGYM--QYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIM 617
            L+   EN   +K LIAA+Y+G +VK+A+NF+ G TNKS EFLK  P GKVP  ET +G  + ESNAI    A L A+ QL G       A V+QW+ F+  EI      W++P LG +  Q    A++ A A L++    LN  L   T+L G  +TLADIV+   L + +++++
Sbjct:    6 LYTYPENFRAYKALIAAQYSGAQVKVADNFKFGETNKSAEFLKKFPGGKVPAFETAEGQYLSESNAI----AYLLANEQLRGGKCPFVQAQVQQWISFADNEIVPASCAWVFPLLGILPQQKNSTAKQEAEAVLQQ----LNQKLQDATFLAGERITLADIVVFSSLLHLYEYVL 172          
The following BLAST results are available for this feature:
BLAST of CN184504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EF1G_RAT1.424e-2942.29Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]
EF1G_PIG1.424e-2942.86Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]
EF1G_MACFA2.428e-2942.29Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HORSE2.428e-2942.29Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]
EF1G_BOVIN2.428e-2942.29Elongation factor 1-gamma OS=Bos taurus GN=EEF1G P... [more]
EF1G_HUMAN1.205e-2841.71Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1GB_XENLA3.507e-2841.48Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G_CARAU5.981e-2842.29Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1G_DANRE7.812e-2841.71Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]
EF1G_DROME1.525e-2341.14Elongation factor 1-gamma OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184504 ID=CN184504; Name=CN184504; organism=Citrus sinensis; type=EST; length=620bp
TCTCTTTTTTTAAACTCCCAGTCGCTCTGTGGCCTTTCAGGAGAACGCTC
GCATTCATCTGTAATTTGAGCGAATCGTTTCTCCGTTAAGCCATGGCTCT
GGTCTTGCATGTTGGGCAGGAAAACAAAAATGGATTCAAAGGACTCATTG
CTGCTGAGTACGCTGGTGTGGAAGTCAAATTGGCTGAGAATTTTGAGATG
GGTGTCACTAATAAATCCCCTGAATTTTTGAAGATGAACCCTCTTGGGAA
GGTTCCTGTGTTGGAGACACCTGATGGTCCGGTTTTTGAGAGCAATGCCA
TTGCCCGTTATGTTGCACGTCTGAAAGCTGACAATCAACTATGTGGTTCT
TCTCTGATCGATTATGCTCATGTTGAGCAGTGGATGGATTTTTCTGCCAT
GGAGATTGATGCTAATATCTCCAGGTGGTTATATCCAAGACTTGGATATA
TGCAATACATTCCTCTGGCTGAGGAAGGTGCTGTTGCCGCACTGAAGAGA
GCATTGGATGCTTTGAACATTCATTTGGCTTCAAATACGTACTTGGTTGG
CCATTCTGTCACCCTGGCTGACATTGTCATGATATGCCATTTATATTATG
GATTTAAGCACATCATGACG
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