CN184504

Overview
NameCN184504
Unique NameCN184504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 59/168 (35.12%), Postives = 94/168 (55.95%), Query Frame = 3
Query:  111 VGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLK-MNPLGKVPVLETPDGPVFESNAIARYVARL-KADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFK 608
            V  EN    K L AA  A V V L +  E G  N++ E+ +  +P G+ PVL+T +G VFESNAI R++ARL ++   L G + ++ + V+ W+DFSA E+DA    +++      +  PL    A+  +   L AL   L + T+LVG  +T+AD+ +   L + ++
Sbjct:    9 VNPENARTHKLLAAAALANVAVTL-KACEYGRENETAEYCRNCSPCGRYPVLQTEEGCVFESNAILRHIARLDRSGGFLYGRTPLEGSQVDMWLDFSATELDAASEPFVHHA---FRGEPL-PANAMDRVHEVLRALEAWLETRTFLVGERMTVADVAVAFALQWHYR 171          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: GSTF4_MAIZE (Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 54/151 (35.76%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  138 KGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEID----ANISRWLY-PRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADI 575
            + L+A E AGV+ +L         ++ PE L  NP GKVPVLE  D  +FES AIAR+V R      L G  L   A V+ W++  A ++     A +   ++ P LG  +   + +E  V  LK+ L+     LA+ TYL G  ++LAD+
Sbjct:   19 RALLALEEAGVDYELVPMSRQDGDHRRPEHLARNPFGKVPVLEDGDLTLFESRAIARHVLRKHKPELLGGGRLEQTAMVDVWLEVEAHQLSPPAIAIVVECVFAPFLGRERNQAVVDEN-VEKLKKVLEVYEARLATCTYLAGDFLSLADL 168          
BLAST of CN184504 vs. ExPASy Swiss-Prot
Match: EF1G_SCHPO (Elongation factor 1-gamma OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  153 AEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICHLYYGFKHIMT 620
            A  AGVEV   E+ ++   N   +     PL K+PV    DG P+ E+ AIA Y+A L     L G++  + A V Q+  F+  E+       + PR+    Y   A + A  A+       +  LAS TYLVG  +TLADI   C L +G  +++T
Sbjct:   22 AAVAGVEV---EHVDVQPHNFPADLAAKFPLQKMPVFVGKDGFPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLT 175          
The following BLAST results are available for this feature:
BLAST of CN184504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EF1G_TRYCR1.528e-1535.12Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]
GSTF4_MAIZE4.916e-1435.76Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE... [more]
EF1G_SCHPO7.848e-1233.76Elongation factor 1-gamma OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184504 ID=CN184504; Name=CN184504; organism=Citrus sinensis; type=EST; length=620bp
TCTCTTTTTTTAAACTCCCAGTCGCTCTGTGGCCTTTCAGGAGAACGCTC
GCATTCATCTGTAATTTGAGCGAATCGTTTCTCCGTTAAGCCATGGCTCT
GGTCTTGCATGTTGGGCAGGAAAACAAAAATGGATTCAAAGGACTCATTG
CTGCTGAGTACGCTGGTGTGGAAGTCAAATTGGCTGAGAATTTTGAGATG
GGTGTCACTAATAAATCCCCTGAATTTTTGAAGATGAACCCTCTTGGGAA
GGTTCCTGTGTTGGAGACACCTGATGGTCCGGTTTTTGAGAGCAATGCCA
TTGCCCGTTATGTTGCACGTCTGAAAGCTGACAATCAACTATGTGGTTCT
TCTCTGATCGATTATGCTCATGTTGAGCAGTGGATGGATTTTTCTGCCAT
GGAGATTGATGCTAATATCTCCAGGTGGTTATATCCAAGACTTGGATATA
TGCAATACATTCCTCTGGCTGAGGAAGGTGCTGTTGCCGCACTGAAGAGA
GCATTGGATGCTTTGAACATTCATTTGGCTTCAAATACGTACTTGGTTGG
CCATTCTGTCACCCTGGCTGACATTGTCATGATATGCCATTTATATTATG
GATTTAAGCACATCATGACG
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