CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB1_CAEEL (Probable succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=F47B10.1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.838e-19
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = -3
Query:   35 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAE 352
            +C++L    E YF+I LDR T GPI+I  S+GG +IE++A   P+ IVK+PIDV  GIT E A ++   +         A E ++KLY++F  SD TL+EINP+AE
Sbjct:  128 VCKRLFTRREYYFSITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKELAHEIAVKMGFSKDCEQQASEIIEKLYQMFKGSDATLVEINPMAE 233          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB1_HUMAN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.678e-18
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            +CE+     E YFAI ++R   GP++IG S GG +IED+A + P  I+K PID+  GI  E A ++    G  P + +   A E + KLY LF + D T++EINP+ E S   ++  DA
Sbjct:  157 VCERKYPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVE--SAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDA 273          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB_NEOFR (Succinyl-CoA ligase [GDP-forming] subunit beta, hydrogenosomal OS=Neocallimastix frontalis GN=SCSB PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.738e-18
Identity = 49/121 (40.50%), Postives = 73/121 (60.33%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDE---DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E+     E YFAI+LDR T GP+++  S+GG  IE++A+  P+ I+ VP  +  G+T E   D AK + G   K   +  A +   KLYK+F E D T++EINP+AE +  ++V  DA
Sbjct:  131 YVVERQYAAREYYFAILLDRATRGPVLVASSEGGVEIEEVAKTNPDAILTVPFSIKTGLTREVALDTAKKM-GFTEKCVPQ--AADTFMKLYKIFIEKDATMVEINPMAENNRGEVVCMDA 248          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB1_MOUSE (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Sucla2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.738e-18
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            +CE+     E YFAI ++R   GP++IG ++GG +IED+A + P  IVK PID+  GI  E A  +    G    + D   A E + KLY LF + D T++EINP+ E S  +++  DA
Sbjct:  157 VCERKYPRREYYFAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQKMGFPSNIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVLCMDA 273          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB1_MACFA (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Macaca fascicularis GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.883e-18
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            +CE+     E YFAI ++R   GP++IG S+GG +IED+A + P  I+  PID+  GI  E A ++    G  P + +   A E + KLY LF + D T++EINP+ E S   ++  DA
Sbjct:  157 VCERKYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIITEPIDIEEGIKKEQALQLAQKMGFPPNIVE--SAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDA 273          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB1_BOVIN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.377e-18
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            +CE+     E YFAI ++R   GP++IG S GG +IED+A + P  IVK PID+  GI  E A ++   +    +  + A E + KLY  F + D T++EINP+ E S   ++  DA
Sbjct:  157 VCERRYPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPASIVDSAAENMIKLYDPFLKYDATMVEINPMVEDSDGAVLCMDA 273          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit beta, hydrogenosomal OS=Trichomonas vaginalis PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.328e-18
Identity = 43/117 (36.75%), Postives = 73/117 (62.39%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            L + + +  E+YFAI+LDR+T  P++I  ++GG  IE++A  +P  I K  +D   GIT+E A  +   L       ++ + +++KL+KLF  SD T +E+NPLAET+  +++  D+
Sbjct:  115 LSDPVEVKRELYFAILLDRQTQSPVVIASTEGGVEIEEVAAHHPEKIHKFVLDGVEGITEEVAKNISTKLGLTGKAYDNGVVEMQKLWKLFVGSDATQVEVNPLAETTDGRIITVDS 231          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB2_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C50F7.4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.208e-17
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            + E + +  E Y A+++DR++ GP+++    GG  IE +AEK P  I K PID+  G+T+  + K+   L  +      A +++K+LY LF   D T +EINPL ET+  ++   DA
Sbjct:  126 IAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMTEGQSLKIAKDLQFEGKLIGVAAQEIKRLYDLFIAVDATQVEINPLVETADGRVFCVDA 242          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_OCHA4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=sucC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA+K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DA
Sbjct:  107 YIEDGADIDRELYLSILIDRTVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDASKLADALKLEGQAREDGVKLFPILYKAFTEKDMSLLEINPLIVMTDGRVRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BRUSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella suis GN=sucC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DA
Sbjct:  107 YIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDA 224          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCB1_CAEEL9.838e-1946.23Probable succinyl-CoA ligase [ADP-forming] subunit... [more]
SUCB1_HUMAN1.678e-1840.34Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB_NEOFR3.738e-1840.50Succinyl-CoA ligase [GDP-forming] subunit beta, hy... [more]
SUCB1_MOUSE3.738e-1840.34Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_MACFA4.883e-1839.50Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_BOVIN6.377e-1839.32Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB_TRIVA8.328e-1836.75Succinyl-CoA ligase [GDP-forming] subunit beta, hy... [more]
SUCB2_CAEEL9.208e-1735.90Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCC_OCHA41.571e-1638.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUSU1.571e-1638.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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