CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_HALSA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halobacterium salinarium GN=sucC PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.347e-12
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E +   NE+Y  + +DR    P+++   +GG  IE +AE+ P  IV+  +D   G+    A   V     +     D  + V+ +Y L+ +SD T +EINP+  TS + +VAADA
Sbjct:   92 EAVDFTNELYVGVTMDRSEGAPVVMVSERGGVDIESVAEEAPEDIVREHVDPSFGLQAYQARNAVYDAGIEQDVAGDVAKIVQGVYDLWADSDATEVEINPVMVTSERDVVAADA 206          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_HALS3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.347e-12
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E +   NE+Y  + +DR    P+++   +GG  IE +AE+ P  IV+  +D   G+    A   V     +     D  + V+ +Y L+ +SD T +EINP+  TS + +VAADA
Sbjct:   92 EAVDFTNELYVGVTMDRSEGAPVVMVSERGGVDIESVAEEAPEDIVREHVDPSFGLQAYQARNAVYDAGIEQDVAGDVAKIVQGVYDLWADSDATEVEINPVMVTSERDVVAADA 206          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia cenocepacia (strain HI2424) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.347e-12
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   ++ A DA
Sbjct:  100 EGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVTALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURCC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia cenocepacia (strain MC0-3) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.347e-12
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   ++ A DA
Sbjct:  100 EGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVTALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURCA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia cenocepacia (strain AU 1054) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.347e-12
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   ++ A DA
Sbjct:  100 EGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVTALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_SACEN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.065e-12
Identity = 35/110 (31.82%), Postives = 59/110 (53.64%), Query Frame = -3
Query:    5 LVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 334
            +V+E YF+ +LDR     + +   +GG  IE++A   P  + K+ ID   G+ +  A ++VD         +  +E V KL++ F   D TL+EINPL +    +++A D
Sbjct:   96 IVDEYYFSFLLDRANRNFLAMASVEGGMEIEEVAATKPEALAKIAIDPIQGVDEAKAREIVDAAKFPAEIADQVVEVVVKLWETFVAEDATLVEINPLVKDPQGKIIALD 205          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_RICCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia conorii GN=sucC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.065e-12
Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+     ++ E YF+I+ DR  +    I  ++GG  IE +AEK P+ I+K  +D   G+ D     +   L  K        E VK +Y  F E+D T +EINPL   S   L+A DA
Sbjct:   97 YIESGCDILKEYYFSIVFDRSASCITFIASTEGGIDIEAVAEKTPDKIIKFSVDPATGLQDFHMRGIAYELGFKDNQAKQMKEIVKSVYNAFIETDATQIEINPLIVNSDGNLLALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_PARL1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.065e-12
Identity = 39/118 (33.05%), Postives = 63/118 (53.39%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +  S+  E+Y +I++DR T+    I  ++GG  IE++A+K P  I+   +D  +GI+     KV   L  +       +  ++KLYK F   D ++LEINPL  T    L+  DA
Sbjct:   97 YIEDGSSISRELYLSILVDRATSRVSFIVSTEGGMDIEEVAKKTPEKILSFSVDPASGISGFHGRKVAYALGLEGDQVKQGVALIEKLYKAFVTEDMSMLEINPLVVTGEGNLLCLDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_PARDP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.065e-12
Identity = 38/118 (32.20%), Postives = 60/118 (50.85%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L    A     +  VK LY++F E D  +LEINPL       L A DA
Sbjct:  107 YIEDGSDIERELYLALLVDRGTSRVSFVASTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLSGAQVKQCVALVKNLYRMFIEKDMEMLEINPLIVMKDGNLKALDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_MYXXD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Myxococcus xanthus (strain DK 1622) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.065e-12
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E L++  E+Y  + LDR T+    +   +GG  IE++AEK+P  I++  +D   G  D    K+  GL       N   +    LY++F ++D +L+EINPL       +VA DA
Sbjct:   97 YIEEGLAIGQELYLGVTLDRATSRITFMASREGGVEIEEVAEKHPEKILRESVDPAVGFQDFQGRKLAFGLGLTGPTVNKFTQFCSALYRMFMDTDASLVEINPLVILKDGGVVALDA 214          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_HALSA2.347e-1233.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALS32.347e-1233.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURCH2.347e-1235.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURCC2.347e-1235.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURCA2.347e-1235.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SACEN3.065e-1231.82Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICCN3.065e-1234.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PARL13.065e-1233.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PARDP3.065e-1232.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYXXD3.065e-1233.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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