CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_STAAM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sucC PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y   ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DA
Sbjct:   97 YIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_STAAE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain Newman) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y   ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DA
Sbjct:   97 YIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_STAAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain COL) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y   ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DA
Sbjct:   97 YIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_STAA9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain JH9) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y   ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DA
Sbjct:   97 YIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_STAA8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain NCTC 8325) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y   ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DA
Sbjct:   97 YIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_STAA3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain USA300) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y   ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DA
Sbjct:   97 YIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_STAA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain JH1) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y   ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DA
Sbjct:   97 YIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_STAA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y   ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DA
Sbjct:   97 YIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_RICRS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia rickettsii (strain Sheila Smith) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+     ++ E YF+I+ DR  +    I  ++GG  IE++AEK P  I+K  +D   G+ D     +   L  K        E VK +Y  F E+D   +EINPL   S   L+A DA
Sbjct:   97 YIESGCEILKEYYFSIVFDRSASCITFIASTEGGVDIEEVAEKTPEKIIKFSVDPATGLQDFHMRGIAYELGFKDNQAKQMKEIVKSVYNAFIETDAAQIEINPLIVNSDGNLLALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_RICRO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia rickettsii (strain Iowa) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = -3 
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+     ++ E YF+I+ DR  +    I  ++GG  IE++AEK P  I+K  +D   G+ D     +   L  K        E VK +Y  F E+D   +EINPL   S   L+A DA
Sbjct:   97 YIESGCEILKEYYFSIVFDRSASCITFIASTEGGVDIEEVAEKTPEKIIKFSVDPATGLQDFHMRGIAYELGFKDNQAKQMKEIVKSVYNAFIETDAAQIEINPLIVNSDGNLLALDA 214
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_STAAM4.003e-1232.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAAE4.003e-1232.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAAC4.003e-1232.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAA94.003e-1232.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAA84.003e-1232.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAA34.003e-1232.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAA24.003e-1232.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAA14.003e-1232.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICRS4.003e-1233.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICRO4.003e-1233.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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