CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACAH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus thuringiensis (strain Al Hakam) GN=sucC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.229e-12
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY+ F E DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGDGKVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=sucC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.229e-12
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY+ F E DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGDGKVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACAA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus anthracis (strain A0248) GN=sucC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.229e-12
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY+ F E DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGDGKVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_AZOSE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Azoarcus sp. (strain EbN1) GN=sucC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.229e-12
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y A + DR T    I+  S+GG  IE++A   P  I+K  +D   G+TD  A  +  G+    A    A++ +K+LY  + E+D +L EINPL       + A DA
Sbjct:  100 EGADIQKEYYVAALTDRATQKVAIMASSEGGMDIEEVAHSTPEKILKEFVDPLVGLTDAQAENLARGIGVPEASVAKAVDALKRLYTCYMETDASLAEINPLILEGNGNIKALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_AGRRK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=sucC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.229e-12
Identity = 39/118 (33.05%), Postives = 59/118 (50.00%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR       +  ++GG  IE +A   P  I+ V ID   G+T  D+  + D L  + A R D  +    LYK F E D  LLE+NPL   +  +L   DA
Sbjct:  107 YIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIETVAHDTPEKIITVAIDPAAGVTAADSTAISDALKLEGAAREDGAKLFPILYKAFVEKDMALLEVNPLIVMTNGRLRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_RICPR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia prowazekii GN=sucC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 41/118 (34.75%), Postives = 58/118 (49.15%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+     ++ E YF+I+ DR  +    I  ++GG  IE +AEK P  I+K  +D   G+ D     +   L  K        E VK +Y  F E+D T +EINPL   S   L+A DA
Sbjct:   97 YIESGCDILKEYYFSIVFDRSASCITFIASTEGGVDIEAVAEKMPEKIIKFAVDPATGLQDFHMRGIAYELGFKDNQAKQMKEIVKAVYNAFIETDATQIEINPLIINSYGNLLALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_NATPD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=sucC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 36/113 (31.86%), Postives = 62/113 (54.87%), Query Frame = -3
Query:    2 LSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 340
            +   +E+Y  + +DR    P+ +  ++GG +IE++AE+ P+ IV+  ID   G+    A K         A  ND    + +LY+L+ + D T +E+NPL  T   +++AADA
Sbjct:   94 VDFTDELYVGVTMDRAAGKPVAMVSTRGGVNIEEVAEEDPDAIVREHIDPAFGMHPFQARKAAFEAGVDRAVANDVASILTQLYELWADKDATEIEVNPLMVTDDDEVIAADA 206          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACCR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sucC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY+ F E DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGEGKVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACC4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain B4264) GN=sucC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY+ F E DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGEGKVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACC2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain G9842) GN=sucC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY+ F E DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNIHIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGEGKVMALDA 214          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_BACAH5.229e-1233.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACAC5.229e-1233.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACAA5.229e-1233.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AZOSE5.229e-1233.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AGRRK5.229e-1233.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICPR6.829e-1234.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NATPD6.829e-1231.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACCR6.829e-1233.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACC46.829e-1233.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACC26.829e-1233.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
back to top