CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_SORC5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sorangium cellulosum (strain So ce56) GN=sucC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 41/120 (34.17%), Postives = 62/120 (51.67%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK--VVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ + L +  E+YFA+++DR+     +I  ++GG  IE++A   P  I K+ ID   G+      +  +  GL  K   R   ++ V  LY  F   DC+LLEINPL  T    + A DA
Sbjct:  102 YIEQGLDIARELYFAMLVDRERRRIAVIASTEGGMDIEEVAHSTPEKIYKLFIDPVLGLAPYQGRQLAIALGLTAKETQR-QFLKLVASLYACFTAEDCSLLEINPLVVTGAGDVFALDA 220          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_METFK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=sucC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = -3
Query:    5 LSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK-LYKLFCESDCTLLEINPLAETSGKQLVAAD 340
            L +  E+Y ++++DR     +++  + GG  IE++A+  P  I++   D  NG+ D  A  +   L   V D+  A  ++ K LY+LF E+D  LLEINPL  T+   LVA D
Sbjct:  102 LPIARELYVSMLVDRSLERVVLVASAAGGMEIEEIAKDSPEKILQEVCDPLNGLVDYQARNIAFALG-LVGDQVAAFTRLAKGLYRLFKENDLALLEINPLIVTAEGALVALD 213          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_MACCJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Macrococcus caseolyticus (strain JCSC5402) GN=sucC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 37/115 (32.17%), Postives = 60/115 (52.17%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y   +LDR T   +++G  +GGT IE++AE  P  I K  ID   G+    A ++   +       N A++ +  LY +F + D +++EINPL  T   +++A DA
Sbjct:  100 EGCDIKKEYYLGFVLDRATDSVVLMGSEEGGTEIEEVAEATPEKIFKEVIDPVVGLMPYQARRLAFNINIPKESVNKAVKIMLGLYDVFMKKDASIIEINPLVTTGDGEVLALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_LEPIN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira interrogans GN=sucC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = -3
Query:    5 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 355
            YL + + +  E Y +I+LDR     II+  ++GG  IE++AE +P  I+K+ ID   G+    A ++   L             +  +Y+ + + D +LLEINPL  T   +++A D
Sbjct:  101 YLEQGIDIAKEYYLSILLDRSIRKTIIMASTEGGMEIEEVAETHPEKILKIAIDPGIGLQVNQARQLAFELGLPAESHKSFQSLLAAIYEAYIKEDASLLEINPLILTKQNEIIAGD 217          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_LEPIC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=sucC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = -3
Query:    5 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 355
            YL + + +  E Y +I+LDR     II+  ++GG  IE++AE +P  I+K+ ID   G+    A ++   L             +  +Y+ + + D +LLEINPL  T   +++A D
Sbjct:  101 YLEQGIDIAKEYYLSILLDRSIRKTIIMASTEGGMEIEEVAETHPEKILKIAIDPGIGLQVNQARQLAFELGLPAESHKSFQSLLAAIYEAYIKEDASLLEINPLILTKQNEIIAGD 217          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_GEOTN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus thermodenitrificans (strain NG80-2) GN=sucC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 36/115 (31.30%), Postives = 63/115 (54.78%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  +++DR T+  +++G  +GGT IE++A K P  I K  +D   G+    A ++   +       N A++ +  LY++F + DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIQKEYYIGLVVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYVDPAVGLQAFQARRLAFNINIPKKLVNQAVKFMMGLYQVFVDKDCSIAEINPLVVTGDGKVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_GEOKA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus GN=sucC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 37/115 (32.17%), Postives = 63/115 (54.78%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  +++DR T+  +++G  +GGT IE++A K P  I K  ID   G+    A ++   +       N A++ +  LY++F + DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIQKEYYIGLVVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGLQAFQARRLAFNINIPKHLVNQAVKFMMGLYQVFVDKDCSIAEINPLVVTGDGKVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_DESPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Desulfotalea psychrophila GN=sucC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E +S+  E+Y +I++DR+ A   II C  GG +IE++A   P  I K+ I+   G       +  + L             +  LYKLF + DC+++EINPL  T   QL+A DA
Sbjct:   99 EGVSIARELYLSILVDRERACITIIACQDGGMNIEEVAASTPERIGKIHINPLIGPRSYHINQAREWLNIAQEQARAFSLFIHALYKLFLDYDCSMVEINPLIITEDNQLIALDA 213          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis GN=sucC PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A + +  LYK F E DC++ EINPL  T    ++A DA
Sbjct:  100 EGCDIKKEYYIGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIKKAVIDPAVGLQGYQAREIAFAINIPKELVGKAAKFMLGLYKAFVEKDCSIAEINPLVVTGDGNVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACFR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacteroides fragilis GN=sucC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 40/117 (34.19%), Postives = 58/117 (49.57%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            L E +++  E Y +  +DR T    +I  + GG  IE++A + P  I++  ID   G+ D  A K    L  +    N     ++ LYK F E D +L EINPL  T    L+A DA
Sbjct:   91 LSEAVNIAAEYYISFTIDRNTRSVTLIMSAAGGMDIEEVARQSPEKIIRCSIDPLIGVPDYLAHKFAFSLFEQAEQANRMATIIQDLYKAFIEKDASLAEINPLVLTPVGTLLAIDA 207          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_SORC51.165e-1134.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_METFK1.165e-1135.40Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MACCJ1.165e-1132.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEPIN1.165e-1130.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEPIC1.165e-1130.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOTN1.165e-1131.30Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOKA1.165e-1132.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DESPS1.165e-1134.78Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACSU1.165e-1133.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACFR1.165e-1134.19Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
back to top