CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_RICB8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia bellii (strain OSU 85-389) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.987e-11
Identity = 39/118 (33.05%), Postives = 58/118 (49.15%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+     ++ E YF+++ DR  +    I  ++GG  IE++AEK P  I+K  +D   G+ +  A  +   L  K        E VK  YK F E+D   +EINPL       L+A DA
Sbjct:   97 YIESGCDILKEYYFSVVFDRSASCITFIASTEGGVDIEEVAEKTPEKIIKFSVDPATGLQNFHAQGIAYELGFKDHQVKQMKEIVKATYKAFIETDAAQIEINPLIVNKEGNLLALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_PERMH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.987e-11
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y AI LDR  +  II+  S+GG  IE++A K P  I+   ID F G+    A ++   L       N A     KLY+L+ + D +++EINPL  T    +V  DA
Sbjct:   97 YIEEGTNIDKEFYVAITLDRSKSKLIIMASSEGGMEIEEVAAKNPEAIITEVIDPFLGLRPYQAREIALKLGLPKNLLNKAAGLFVKLYELYMKEDASMVEINPLVLTKEGNIVILDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_LEPBL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.987e-11
Identity = 35/117 (29.91%), Postives = 60/117 (51.28%), Query Frame = -3
Query:    5 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 355
            YL + + +  E Y +I+LDR     I++  ++GG  IE++AE +P  I+K+ +D   G+    A ++   L             V  +Y  + + D +LLEINPL  T   +++A D
Sbjct:  101 YLEQGIDIAKEYYLSILLDRSIRKTILMASTEGGMEIEEVAETHPEKILKIAVDPGIGLQVNQARQLAFELGLPAESHKSFQSLVMAIYDAYIKEDASLLEINPLILTKQNEIIAGD 217          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_LEPBJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.987e-11
Identity = 35/117 (29.91%), Postives = 60/117 (51.28%), Query Frame = -3
Query:    5 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 355
            YL + + +  E Y +I+LDR     I++  ++GG  IE++AE +P  I+K+ +D   G+    A ++   L             V  +Y  + + D +LLEINPL  T   +++A D
Sbjct:  101 YLEQGIDIAKEYYLSILLDRSIRKTILMASTEGGMEIEEVAETHPEKILKIAVDPGIGLQVNQARQLAFELGLPAESHKSFQSLVMAIYDAYIKEDASLLEINPLILTKQNEIIAGD 217          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BEUC1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.987e-11
Identity = 38/118 (32.20%), Postives = 64/118 (54.24%), Query Frame = -3
Query:    5 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV--DGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 352
            + E  S+  E YF+++LDR     + +   +GG  IE LA + P  + +V +D   GI    AA++V   G A  VA      + ++KL+ ++   D TL+E+NPL  T+  +++A D
Sbjct:   94 IAEGASIAEEYYFSVLLDRANRSYLAMASVEGGVEIEQLAVERPEALARVAVDPLVGIDAAKAAEIVAAAGFADDVA--GAVADVIQKLWTVYDAEDATLVEVNPLVRTTDGRVIALD 209          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC1_STRCO (Succinyl-CoA ligase [ADP-forming] subunit beta-1 OS=Streptomyces coelicolor GN=sucC1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.987e-11
Identity = 37/112 (33.04%), Postives = 61/112 (54.46%), Query Frame = -3
Query:    5 LVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG--LAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 334
            +V E Y + +LDR     + I   +GG  IE++A   P  + K PID  +G+T E A ++V+      +VAD+    + + KL+  F + D  L+E+NPLA+     ++A D
Sbjct:   97 IVEEYYVSFLLDRANRTFLSIASVEGGVEIEEVAATRPEAVAKTPIDAIDGVTPEKAREIVEAAKFPAEVADK--VADILVKLWDTFIKEDALLVEVNPLAKVVSGDVIALD 206          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_STACT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus carnosus (strain TM300) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.595e-11
Identity = 38/118 (32.20%), Postives = 59/118 (50.00%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E   +  E Y   ++DR T    ++   +GGT IE++A K P  I K  ID   G+    A ++   +       N A + +  LY +F E DC+++EINPL  T    ++A DA
Sbjct:   97 YIEEGADIKKEYYVGFVIDRATDRVTLMASEEGGTEIEEVAAKSPEKIFKETIDPVVGLAPFQARRIAFNINIPKESINKAAKFLIALYNVFIEKDCSIVEINPLVLTGEGDVLALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_SINMW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.595e-11
Identity = 39/118 (33.05%), Postives = 60/118 (50.85%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR       +  ++GG  IE +AE  P  IV V ID   G+T +D   + + L      R DA +    LYK F E D +LLE+NPL   +  ++   DA
Sbjct:  107 YIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIEAVAEHTPEKIVTVAIDPDKGVTADDLKTLTEALKLDGEARADAEKLFPILYKAFVEKDMSLLEVNPLIVMTNGRMRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_MESSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.595e-11
Identity = 38/118 (32.20%), Postives = 59/118 (50.00%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  I+ + I    G+T++D  K+   L    A   D       LYK F E D +LLE+NPL      +L   DA
Sbjct:  107 YIEDGADIARELYLSILIDRTVGRPAFVVSTEGGMDIEAVAEETPEKILTLAIAPERGVTNDDVTKLNAALKLDGAAAKDGETLFPILYKAFTEKDMSLLEVNPLIVMQNGRLRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_JANMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Janthinobacterium sp. (strain Marseille) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.595e-11
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  +++DR +    ++  S+GG  IE +AE  P  I KV ID   G+ D +A    D +A K+     +I Q +     LYK F E+D +L EINPL  T   ++VA DA
Sbjct:  100 EGADIKKELYVGMVVDRGSQRVALMASSEGGMDIEHVAEHTPEKIHKVFIDPVKGLLDSEA----DDIARKIGVPEGSIGQARAFMQGLYKAFDETDASLAEINPLIVTGDDRIVALDA 214          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_RICB81.987e-1133.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PERMH1.987e-1135.59Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEPBL1.987e-1129.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEPBJ1.987e-1129.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BEUC11.987e-1132.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC1_STRCO1.987e-1133.04Succinyl-CoA ligase [ADP-forming] subunit beta-1 O... [more]
SUCC_STACT2.595e-1132.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SINMW2.595e-1133.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MESSB2.595e-1132.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_JANMA2.595e-1136.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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