CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BRUSI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=sucC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DA
Sbjct:  107 YIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BRUO2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=sucC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DA
Sbjct:  107 YIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BRUME (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella melitensis GN=sucC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DA
Sbjct:  107 YIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BRUMB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=sucC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DA
Sbjct:  107 YIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BRUC2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=sucC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DA
Sbjct:  107 YIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BRUAB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella abortus GN=sucC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DA
Sbjct:  107 YIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BRUA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella abortus (strain S19) GN=sucC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.571e-16
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DA
Sbjct:  107 YIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB_SCHPO (Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC1620.08 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.051e-16
Identity = 42/118 (35.59%), Postives = 71/118 (60.17%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+CE+  +  E YFAI++DR+   P+I+   +GG  IE +A + P+ I+K  +     +    A ++VD L    + +  A++ + KLYK+F + D T +EINPLAET+  +++  DA
Sbjct:  126 YVCERKFIRKEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKRSLPNSPNLDPHIAEELVDKLGFSSSSKPKAVDAIVKLYKVFNDCDATQVEINPLAETTDHKVLCMDA 243          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_DESAH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=sucC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.795e-16
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = -3
Query:    2 LVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 334
            +  E+Y +I++DR TAG +I+   +GG  IE +A K P  I+KV +D   GI      +V  GL    A   +    +K LY LF ++DC+LLEINPL  TS  +++A DA
Sbjct:  104 IAKELYLSILVDRATAGIVIMASQEGGMDIETVAAKTPEKIIKVRVDPLTGIQGYYLRQVGFGLGLPKAALKEFSALLKNLYTLFVKNDCSLLEINPLILTSDDRVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB_YEAST (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=LSC2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.737e-15
Identity = 40/107 (37.38%), Postives = 67/107 (62.62%), Query Frame = -3
Query:   35 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAE 355
            Y+ +++   +E Y +I++DR+T  P+II  S+GG +IE++AE+ P+ I K  I+   G++ + A  V   L      +++A + V  LYK+F E D T +EINPL+E
Sbjct:  134 YIVKRVDTKHEAYLSILMDRQTKKPMIIASSQGGMNIEEVAERTPDAIKKFSIETSKGLSPQMAKDVAKSLGFSPDAQDEAAKAVSNLYKIFMERDATQVEINPLSE 240          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_BRUSI1.571e-1638.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUO21.571e-1638.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUME1.571e-1638.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUMB1.571e-1638.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUC21.571e-1638.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUAB1.571e-1638.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUA11.571e-1638.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB_SCHPO2.051e-1635.59Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCC_DESAH7.795e-1640.54Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB_YEAST1.737e-1537.38Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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