CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_WOLWR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.389e-11
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG--LAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  S+  E Y ++++D K + PI I  S+GG  IE++A+  P  IVK  ID     T  D++K+     L+P+  ++   +   K +Y  F  +D + +EINPL ETS    +A DA
Sbjct:   97 YVEEGSSIKKEYYLSLVIDPKLSRPIFIFSSEGGMDIEEVAKNSPAKIVKFDID---SATSFDSSKLSSSFHLSPEQIEKITNV--AKNIYDAFIATDASQIEINPLVETSSGDFIALDA 211          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_WOLPM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Wolbachia pipientis wMel GN=sucC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.389e-11
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  S+  E Y ++++D K + PI I  S+GG  IE++A+  P  IVK  ID     T  D++K+     L+P+  ++   I   KK+Y  F  +D + +EINPL ET+    +A DA
Sbjct:   97 YVEEGSSIKKEYYLSLVIDPKLSRPIFIFSSEGGMDIEEVAKNSPAKIVKFDID---PATSFDSSKLSSRFHLSPEQIEKISNI--AKKIYDAFIATDASQIEINPLVETNSGDFIALDA 211          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_VEREI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Verminephrobacter eiseniae (strain EF01-2) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.389e-11
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL---APKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E   +  E Y +I+ DR T     I  S+GG  IE++    P MI+   +D   G+  E A K+  G+   AP  A +  A++ +++LY+ + ++D +LLEINPL      +L A DA
Sbjct:   97 YIEEGADIGKEYYLSIVTDRATQKLAFIASSEGGMDIEEVKRAKPEMIITEFVDPLAGLGPEQALKIAVGIGLPAPAQA-QAQAVDIMRRLYQCYMDTDASLLEINPLNCDGQNRLTALDA 216          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_SALAI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salinispora arenicola (strain CNS-205) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.389e-11
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = -3
Query:    2 LVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 334
            +  E YF+ +LDR     + I    GG  IE +A + P  +VK PID   G+    A +++   G   +V D+  A+E    L+K F   D TL+E+NPLA T    L+  DA
Sbjct:   96 VAEEYYFSYLLDRANRTFLCIASVAGGMDIEQVAAETPEKVVKAPIDANTGVDAAMARQIITRAGFPAEVVDQ--AVEVAVDLWKAFVAEDATLVEVNPLARTGQGGLLLLDA 206          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_DELAS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.389e-11
Identity = 36/118 (30.51%), Postives = 59/118 (50.00%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E Y + + DR T     I  S+GG  IE++A   P  I+ + +D   G+T     ++  G+          I+  +KLYK + ++D +L+EINPL   S   +VA DA
Sbjct:   97 YIEDGADIQKEYYLSCVTDRGTQKVAFIASSEGGMDIEEVAHSTPEKIITIFVDPLVGLTQAQGEELAKGIGMPADSTAQFIDICQKLYKCYMDTDASLVEINPLNRDSKGNVVALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_CAMJJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sucC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.389e-11
Identity = 41/118 (34.75%), Postives = 58/118 (49.15%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+    ++V E Y AI+ +R      II  S+GG  IE +A++ P  I KV ID   G       +V   L     +    I  + KLYKL+ + D  +LEINPL +T+     A DA
Sbjct:   97 YIESGANIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHGLEVAKVLGLDKDESKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_ZYMMO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Zymomonas mobilis GN=sucC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.426e-11
Identity = 37/117 (31.62%), Postives = 58/117 (49.57%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            + E +S+  E Y ++++DR+T     +   +GG  IE +A++ P  I ++ ID   G        +   L          I+    LYK F  SD +LLEINPL ET+  +L+  DA
Sbjct:  107 ITEAVSIAREFYLSLLVDRQTGRVTFVASPEGGMDIETVAKEKPEAIHRIAIDPATGFQPHHGRMIGFALGLSGDVFKQGIKLAASLYKAFTTSDMSLLEINPLVETNDGKLLPVDA 223          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_HALLT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=sucC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.426e-11
Identity = 35/113 (30.97%), Postives = 63/113 (55.75%), Query Frame = -3
Query:    2 LSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 340
            +  V+E+Y  + +DR    P+++  ++GG +IE++AE+ P+ I +  +D   G+    A KVV           D    +  LY L+ E+D + +E+NP+  TS + ++AADA
Sbjct:   94 VDFVDELYVGVTMDRGEGQPVLMVSTEGGVNIEEVAEENPDAIAREHVDPAFGLHPYQARKVVYEAGVDADVALDVASILTTLYDLYEENDASEIEVNPVMITSDRDVIAADA 206          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_DESK1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=sucC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.781e-11
Identity = 35/115 (30.43%), Postives = 60/115 (52.17%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E + +  E+Y ++ +DR T   + +    GG  IE+LA K+P+ I+++P+D F G +   A   +  L  +          ++ +YK+  + D  L+E NPLA T   +L A DA
Sbjct:   93 EAVCISRELYMSLTVDRATRKLVYLASGMGGVEIEELARKHPDKILRIPVDPFIGYSGYMARHALGFLGLQWDKLGQLDNIMRAMYKIMIDYDAELVEFNPLAYTCDGRLTALDA 207          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_CAMJR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter jejuni (strain RM1221) GN=sucC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.781e-11
Identity = 41/118 (34.75%), Postives = 58/118 (49.15%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+    ++V E Y AI+ +R      II  S+GG  IE +A++ P  I KV ID   G       +V   L     +    I  + KLYKL+ + D  +LEINPL +T+     A DA
Sbjct:   97 YIESGANIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHGLEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDA 214          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_WOLWR3.389e-1135.00Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_WOLPM3.389e-1135.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VEREI3.389e-1133.88Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SALAI3.389e-1135.40Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DELAS3.389e-1130.51Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAMJJ3.389e-1134.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ZYMMO4.426e-1131.62Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALLT4.426e-1130.97Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DESK15.781e-1130.43Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAMJR5.781e-1134.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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