CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: MTKA_METEA (Malate--CoA ligase subunit beta OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.861e-11
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = -3 
Query:    2 EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 325
            E+Y   +LDRK     +I   +GG  IE++A K P  +++V ++   G+    A ++   L   +   + A++ +   Y+ F + D T+LEINPL  T   +++A DA
Sbjct:  107 ELYLGYVLDRKAERVRVIASQRGGMDIEEIAAKEPEALIQVVVEPAVGLQQFQAREIAFQLGLNIKQVSAAVKTIMNAYRAFRDCDGTMLEINPLVVTKDDRVLALDA 214
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
MTKA_METEA9.861e-1130.56Malate--CoA ligase subunit beta OS=Methylobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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