CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:630..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_DESAA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Desulfatibacillum alkenivorans (strain AK-01) GN=sucC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.268e-15
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = -3
Query:    2 LSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 340
            L +  E+YF+I++DR TA  +I+    GG  IE++A   P  I+KVP+D   G+      +    L    A     I+ V+ LYK+F ++DC+LLEINPL  T    ++A DA
Sbjct:  102 LDIAKELYFSIIVDRATAKIVIMCSEAGGMDIEEVAASTPEKIIKVPVDPLLGVQGYHCRQAAYRLNLPPAAIKPFIKMVQGLYKMFMDTDCSLLEINPLVLTGDDGIIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_ALKOO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=sucC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.053e-15
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y A  LDR+ +   +I   +GG  IE++A   P+ I+K  ID   G+TD    +V   L    +  ND +E +K LY+ F E DC+LLEINPL  T   +++A DA
Sbjct:  100 EGCEIYKEYYIAFTLDRENSKIALIASEEGGMDIEEVAANRPDKILKEIIDPLIGLTDFQGRRVCFNLNIDGSLINDTVELMKNLYRCFIEKDCSLLEINPLVITKNNRVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_MAGSA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=sucC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.599e-15
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y ++++DR T    I+  ++GG  IE++A  +P  I+KV ID   G       ++  GL  +    N  ++ V  LYK F + DC+++EINPL  T   +L+A DA
Sbjct:  106 YIEQGCDIKRELYLSMLVDRATCRVTIVASTEGGMEIEEVAHNHPEKILKVAIDPVEGFQQYHGRQIAFGLGLEGKQVNTCVKFVGALYKAFMDLDCSIVEINPLVVTGAGELIALDA 223          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_GEOLS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=sucC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.599e-15
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E + +  E Y +I LDR+T+   +I  ++GG  IE++A+K P+ I  + ID F G+    A K+   L    A   D +E +   YK   E DC+L+EINPL  T    L+A DA
Sbjct:   99 ETVEIAREFYLSITLDRETSRYCLIASAEGGMDIEEVAQKSPDKIHVLTIDPFTGLRTYQARKIALALGLSGAVCEDCVELILNTYKCCLEKDCSLIEINPLVVTRAGWLLAMDA 213          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BART1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=sucC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.126e-14
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y ++++DR       +  ++GG  IE +AE+ P  I  +PIDV  G+T  D A++ D L    + R D  +    LYK FCE D +LLEINPL       L   DA
Sbjct:  107 YIEDGADIERELYLSLLVDRSVGRIAFVVSTEGGMDIETVAEETPEKIFTLPIDVTEGVTSADCARLCDALELHDSAREDGEKLFPILYKAFCEKDMSLLEINPLIVMKDGHLRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_SULNB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sulfurovum sp. (strain NBC37-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.470e-14
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = -3
Query:    5 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA-PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 355
            Y+ +   + +E Y +++LDRK   P+I+  ++GG +IED+AE  P  I+ VP+D   G       ++  GL     A++ + I   +KLYKL+ + D  ++EINPL  T   + +A D
Sbjct:   97 YIEDGADIKDEFYLSVILDRKLEMPLIMASTEGGMNIEDVAENTPEKIITVPVDPTIGFQGFHGRELAFGLGITDKAEQKNIITFAQKLYKLYMDKDAEMIEINPLVRTGSGEFLALD 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_PELUB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelagibacter ubique GN=sucC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.470e-14
Identity = 38/118 (32.20%), Postives = 67/118 (56.78%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y + ++DR ++  + I   +GG  IE++AEK P  I+   ID+ + I+D D  K++   A     +  AI  +K +YK+F  +D  ++E+NPL  T  K+++  DA
Sbjct:   97 YVEESSNIDKEFYLSCLVDRASSKIVFISSDQGGMDIEEVAEKTPEKIITTKIDITDEISDADCEKIIAIYALADDAKKQAIALIKSVYKMFLGTDANMVEVNPLILTKEKKIICLDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_OPITP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.470e-14
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = -3
Query:    2 EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 325
            E Y AI+LDR T+ P+I+  ++GG  IE +A   P+ I KV +D   G+ D    ++V  L    A+  +A + ++ LY+ F E+D +++E+NPL  T   Q+ A DA
Sbjct:  114 EYYLAILLDRATSRPVIVASTEGGMEIEKVAHDTPDRIFKVHVDPAYGLADFQVRELVFKLGFTAAEGKNASKLIRALYRCFWENDASMVEVNPLITTPDGQVEALDA 221          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_POLSQ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.508e-14
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = -3
Query:    2 EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 325
            E YF+I+ DR T   +I+  S+GG  IE++AE +P  I+KV +D   G+TD D   V  G+    A    A +  K LYK + ++D +L+EINPL      ++ A DA
Sbjct:  107 EYYFSIVTDRGTQKNVIMASSEGGMDIEEVAESHPEKIIKVFVDPMVGLTDADCDIVAKGIGVPEASIPMARDVFKNLYKTYWDTDASLVEINPLILEGNGKIKALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_POLNS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Polynucleobacter necessarius (strain STIR1) GN=sucC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.275e-14
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = -3
Query:    2 EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 325
            E YF+I+ DR T   +I+  S+GG  IE++AE +P  I+KV +D   G+TD D   +  G+    A    A +  K LYK + ++D +L+EINPL      ++ A DA
Sbjct:  107 EYYFSIVTDRGTQKNVIMASSEGGMDIEEVAESHPEKIIKVFVDPMVGLTDADCDIIAKGIGVPEASIPMARDVFKNLYKTYWDTDASLVEINPLILEGNGKIKALDA 214          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_DESAA2.268e-1538.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALKOO5.053e-1538.26Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MAGSA6.599e-1533.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOLS6.599e-1537.39Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BART11.126e-1435.59Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SULNB1.470e-1433.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PELUB1.470e-1432.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_OPITP1.470e-1437.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_POLSQ2.508e-1438.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_POLNS3.275e-1437.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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