CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_RICTY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia typhi GN=sucC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+     ++ E YF+I+ DR  +    I  ++GG  IE +AEK P  I+K  +D   G+ D     +  GL  K +      E VK +Y  F E+D T +EINPL   S K L+A DA
Sbjct:   97 YIESGCDILKEYYFSIVFDRSASCITFIASTEGGVDIEAVAEKMPEKIIKFAVDPATGLQDFHMRGIAYGLGFKDSQAKQMKEIVKSVYNAFIETDATQIEINPLIINSYKNLLALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_MICLC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 39/116 (33.62%), Postives = 64/116 (55.17%), Query Frame = -3
Query:    5 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 352
            + +   +  E YF+++LDR     + +   +GG  IE LAE+ P  + KVP+    GI  E A K+V         R D  E ++KL+++F + D TL+E+NPL +T   +++A D
Sbjct:   90 IAQGADIAEEYYFSVLLDRANRTYLAMCSVEGGMEIEQLAEERPEALAKVPVSALTGIDAETAQKIVAEAGFPEELRADVAEVIQKLWEVFEKEDATLVEVNPLVKTGDGKILALD 205          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_DIAST (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Diaphorobacter sp. (strain TPSY) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   + NE+Y +++ DR T    +I  S+GG  IE++A   P  I+   ID   GIT E + KV   +    A  + A++   KLYK + ++D +L+EINPL   S   L+A DA
Sbjct:   97 YIEDGADIKNELYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEMIDPLTGITPEQSKKVAAAIGLTGASVDQAVDLFAKLYKCYMDTDASLVEINPLNCDSKGNLMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BORA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella avium (strain 197N) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E Y +++ DR T    +I  S+GG  IE++A   P  I+   ID   G+TD  A KV D +         A++  KKLY+ + ++D +L+EINPL   S   ++A DA
Sbjct:   97 YIEDGADIQKEYYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEYIDPIVGLTDAQAKKVADAIGMPADSTAQAVDVFKKLYQCYMDTDASLVEINPLNRDSKGNIIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_ACISJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidovorax sp. (strain JS42) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   + NE+Y +++ DR T    +I  S+GG  IE++A   P  I+   ID   GIT E + KV   +    A  + A++   KLYK + ++D +L+EINPL   S   L+A DA
Sbjct:   97 YIEDGADIKNELYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEMIDPLTGITPEQSKKVAAAIGLTGASVDQAVDLFAKLYKCYMDTDASLVEINPLNCDSKGNLMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_ACIC1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = -3
Query:    5 LSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 340
            + + +E Y A ++DR     + +G ++GG  IE +A + P  IV+VPID   G+    AA++ D +    A R++A+  ++ L++ F   D +L+E+NPL  T   +L+A D
Sbjct:   94 VDIAHEYYVAFLVDRSRRSFLAMGSAEGGVEIEQVAAENPQAIVRVPIDATEGVDATLAARIADDIGFPAAVRDEAVRILRGLWEAFQAEDASLVEVNPLVRTLDDRLIALD 205          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_ACIAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   + NE+Y +++ DR T    +I  S+GG  IE++A   P+ IV   ID   GIT E   KV + +       + A++   KLYK + ++D +L+EINPL   S   L+A DA
Sbjct:   97 YIEDGADIKNELYVSLVTDRATQKVALIASSEGGMDIEEVAHSTPDKIVTEMIDPLTGITPEQGRKVAEAIGLSGKSVDQALDIFAKLYKCYMDTDASLVEINPLNCDSKGDLMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_SULDN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.586e-14
Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = -3
Query:    5 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRND---AIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 355
            Y+ E   +  E+Y  ++LDR    P+I+  ++GG +IED+A   P  I+K+ +D   G       ++V GL   + D N+    I    KLYKL+ E+D  ++EINPL +T   + +A D
Sbjct:   97 YIEEGADIKEELYLGVVLDRAREMPVIMASTEGGMAIEDVAHNTPEKIIKIAVDPAIGFQGFHGRELVFGLG--ITDPNEQKKLISFASKLYKLYMENDAEMIEINPLVKTGSGEFLALD 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_NAUPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.586e-14
Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E   + +E+Y  ++LDR    P+++  ++GG  IE++AEK P  I+KV ID   G     A K+  GL     ++ + I+    LY ++ ++D  ++EINPL +T   + +A DA
Sbjct:   97 YIEEGADIKDELYLGMVLDRALEMPVMMASTEGGMEIEEVAEKTPEKIIKVAIDPAIGFQPFHARKLAFGLGLPKDEQREFIKFASALYNVYMDNDAEMIEINPLIKTGDGKFLALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_EXIS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=sucC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.586e-14
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E  ++  E Y  I+LDR T   +I+G S+GG  IE++AE  P  I+K  +D   G+    A K+   +   V   N  +  V KLY  F + DC++ EINPL  T    ++A DA
Sbjct:  100 EGCAIDKEYYLGIVLDRVTGRVVIMGSSEGGMDIEEVAEATPEKIIKEVVDPAVGLQAFQARKLAFAMGVPVKLVNKFVGMVTKLYTFFVDKDCSIAEINPLVTTKDGDVLALDA 214          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_RICTY4.277e-1436.44Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MICLC4.277e-1433.62Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DIAST4.277e-1435.59Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORA14.277e-1433.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACISJ4.277e-1435.59Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIC14.277e-1433.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIAC4.277e-1435.59Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SULDN5.586e-1434.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NAUPA5.586e-1433.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EXIS25.586e-1436.52Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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