CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BORPE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella pertussis GN=sucC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.586e-14
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+    A    A  + +KLYK + ++D +L EINPL  T    ++A DA
Sbjct:  100 EGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDIIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BORPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella parapertussis GN=sucC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.586e-14
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+    A    A  + +KLYK + ++D +L EINPL  T    ++A DA
Sbjct:  100 EGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDIIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BORBR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella bronchiseptica GN=sucC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.586e-14
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+    A    A  + +KLYK + ++D +L EINPL  T    ++A DA
Sbjct:  100 EGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDIIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BARHE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella henselae GN=sucC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.586e-14
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y ++++DR       +  ++GG  IE +AE+ P  I+ +PI+   G+T  D A++ D L    + R D  +    LYK FCE D +LLEINPL   +   L   DA
Sbjct:  107 YIEDGADIERELYLSLLVDRNVGRVAFVVSTEGGMDIETVAEETPEKILTLPINSTQGVTSSDCARLCDALDLHDSAREDGEKLFPILYKAFCEKDMSLLEINPLIVMTNGHLRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_EXISA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=sucC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.296e-14
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E  ++  E Y  ++LDR     +I+G S+GG  IE++AE  P  I K  +D   G+    A ++   +       N+  + V KLYK++ E+DCT+ EINPL  T    ++A DA
Sbjct:   97 YIEEGSAIDQEFYLGLVLDRSIGRIVIMGSSEGGMDIEEVAEHTPEKIHKEIVDPVVGLRPFQARRLAFKMEVPTKLVNEFSDMVMKLYKVYVETDCTIAEINPLVTTKDGNVIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_POLSJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=sucC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.529e-14
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E Y + + DR++     I  S+GG  IE++A   P  I+KV +D   G+TD  A +V  G+          ++ ++KLYK + E+D +L+EINPL   S  +++A DA
Sbjct:   97 YIEDGADIQKEYYVSAVTDRESQKVAFIASSEGGMDIEEVAHSNPEKIIKVFVDPLVGMTDAQAKEVAAGIGMPADSVAQTVDVLQKLYKCYMETDASLVEINPLNRNSKGEIMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_METJA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Methanocaldococcus jannaschii GN=sucC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.529e-14
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            EKL +  E Y +I++DR    P+II  ++GG  IE++AEK P  I+K  IDV        A  +V        +     + + KLYK+F E D T++EINPL  T    + AADA
Sbjct:   90 EKLPIEKEYYVSIIIDRDAKKPLIIFSTEGGVDIEEVAEKNPEKIIKYHIDVRKPFLPYIARWIVKEAKLPSNEIGKVADVIYKLYKIFKELDATMVEINPLVITKDGNVYAADA 204          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURS3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia sp. (strain 383) GN=sucC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.529e-14
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y ++++DR T   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +S  +++A DA
Sbjct:  100 EGADIKQELYVSLVVDRVTQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSSDGKVIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_GEOSL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacter sulfurreducens GN=sucC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.245e-13
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E + +  E Y +I LDR T+   +I  ++GG  IE++ +K P+ I  + ID + G+    A ++   L        D +E +  LYK+  E DC+L+EINPL  T    L+A DA
Sbjct:   99 EAVEIAREFYLSITLDRSTSRYCLIASAEGGVDIEEVVQKSPDKIHVLTIDPYTGLRPFQARRIALALGLSGTLCEDCVELMLNLYKVVLEKDCSLVEINPLVVTRAGWLMAMDA 213          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_ALKMQ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus metalliredigens (strain QYMF) GN=sucC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.245e-13
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = -3
Query:    5 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 346
            E L +  E Y +  +D  T+  ++IG  +GG  IE++AEK P+ I K  ID   G+    A ++   +    A   +A + +  +Y+LF E DC+++EINPL  T   ++VA D
Sbjct:  100 EGLKIEKECYLSCAVDSTTSTVVLIGSPEGGMDIEEVAEKTPHKIFKESIDPAIGLQQYQARRLAFNMGINEACLQEAAQCIMNIYRLFMEKDCSMVEINPLITTEEHKVVALD 213          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_BORPE5.586e-1435.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORPA5.586e-1435.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORBR5.586e-1435.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARHE5.586e-1433.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EXISA7.296e-1434.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_POLSJ9.529e-1433.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_METJA9.529e-1438.26Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURS39.529e-1436.97Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOSL1.245e-1334.78Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALKMQ1.245e-1334.21Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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