CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_POLNA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Polaromonas naphthalenivorans (strain CJ2) GN=sucC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.625e-13
Identity = 39/118 (33.05%), Postives = 63/118 (53.39%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E Y +++ DR T     I  S+GG  IE++A   P  I+   ID   G+ +E A K+ +G+         A++  +KLYK + ++D +L+EINPL   S   L+A DA
Sbjct:   97 YIEDGADIQKEYYVSLVTDRATQKVAFIASSEGGMDIEEVAHSTPEKIITEFIDPLTGLGEEQAVKIANGIGLPPESTAQAVDIFQKLYKCYMDTDASLVEINPLNRDSKNALMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_ACICJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=sucC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.625e-13
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -3
Query:    2 EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 325
            E+Y ++++DR  +  +I+  ++GG  IE++AEK+P  I++V +D  +GI+   A ++  GL           + V  +YK F   DC ++EINPL  T   ++VA DA
Sbjct:  116 ELYLSLLVDRAKSEIVIMASTEGGMEIEEVAEKHPEKILRVAVDPASGISGFHARRLGFGLGLDATQMKAFAKFVNAMYKAFVALDCAIVEINPLVVTGAGEVVALDA 223          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_ACIBL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidobacteria bacterium (strain Ellin345) GN=sucC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.625e-13
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E L +  E+Y +I+LDR    P+ +  + GG  IE++A K PN I+K  I+   G+    A K+   L  K      A++ ++ LYK + E+D +L+EINP   TS  +L A DA
Sbjct:  103 ETLPIERELYLSIVLDRSNGKPVFMASAAGGMEIEEVAAKDPNAIIKEWIEPGYGLGAFQARKIAFKLGLKPELIGQAVKFMQALYKTYDETDASLVEINPFITTSDNRLFALDA 217          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_NOCSJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nocardioides sp. (strain BAA-499 / JS614) GN=sucC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.123e-13
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = -3
Query:    5 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 337
            S+  E YF+ +LDR     + I   +GG  IE++A+  P+ + ++PID   G+ +  A ++V       A    A++ V  L+K+F E D TL+E+NPLA  +G +L A D
Sbjct:   94 SIEEEYYFSFLLDRANRRYLCIASVEGGVEIEEVAKTNPDAVRQIPIDPGAGVDEAKAREIVADAKFPEALTEQAVQTVLALWKVFVEEDATLVEVNPLARLAGDKLEALD 204          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_DECAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Dechloromonas aromatica (strain RCB) GN=sucC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.123e-13
Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   + +E Y A + DR T    I+   +GG  IE++A K P  IVKV ++   G+TDE A  +  G+    A     IE +K LY  + E+D +L EINPL       + A DA
Sbjct:  100 EGADIKHEYYVAALTDRATQSVAIMASYEGGMDIEEVAHKTPEKIVKVFVNPLVGLTDEQALTLAKGMGMNEASIPQCIETLKSLYTCYMETDASLAEINPLIHEGDGTVKALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURTA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=sucC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.123e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSTGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACLD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=sucC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.123e-13
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  IVK  ID   G+    A K+   +         A++ +  LYK F E DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIKKEYYVGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIVKEVIDPAVGLQSYQARKIAFAINIPKELVGQAVKFMMGLYKAFTEKDCSIAEINPLVVTGDGKVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BARBK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +  ++  E+Y ++++DR T     +  ++GG  IE +A + P  I  + ID   G+TD D  K+ D L      R D  +    LYK FCE D +LLEINPL      +L   DA
Sbjct:  107 YIEDGANIERELYLSLLIDRTTGRVAFVVSTEGGMDIETVAAETPEKICTLSIDPAEGVTDADCVKLCDELNLSGNAREDGEKLFPILYKAFCEKDMSLLEINPLIVMDDGRLRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACP2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus pumilus (strain SAFR-032) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  IVKV ID   G+    A +V   +         A++ +  LY  F E DC++ EINPL  T   +++A DA
Sbjct:  100 EGCDIQKEYYVGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIVKVVIDPAIGLQGYQAREVAFKINIPTKLVGQAVKFMTSLYNAFIEKDCSIAEINPLVVTGDGKVMALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_MARMM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Maricaulis maris (strain MCS10) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.621e-13
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y +++++R+T     +  ++GG  IE++A + P  I  + ID   G+TD  AA V D L  +   R D +   K LY  FCE D ++LEINPL       +   DA
Sbjct:  107 YIEDGADIATELYCSLLVNRETGQVAFVVSTEGGMDIEEVAAETPEKIQTIDIDPSTGVTDASAAAVCDALKLEGQAREDMMGLAKILYTAFCEKDMSMLEINPLIVMDNGHVRVLDA 224          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_POLNA1.625e-1333.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACICJ1.625e-1334.26Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIBL1.625e-1336.52Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NOCSJ2.123e-1335.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DECAR2.123e-1336.52Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURTA2.123e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACLD2.123e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARBK2.772e-1334.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACP22.772e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MARMM3.621e-1333.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
back to top