CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURXL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia xenovorans (strain LB400) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.621e-13
Identity = 37/115 (32.17%), Postives = 65/115 (56.52%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  +++DR +   +++  S+GG  +E++AEK P +I K+ +D   G+ D +A ++   +    A    A   ++ LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGLVIDRVSQKIVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEADELATKIGVPAASLPQARAILQGLYKAFWETDASLAEINPLILTGDGKVIALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURPP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.621e-13
Identity = 37/115 (32.17%), Postives = 65/115 (56.52%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  +++DR +   +++  S+GG  +E++AEK P +I K+ +D   G+ D +A ++   +    A    A   ++ LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGLVIDRVSQKIVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEADELATKIGVPAASLPQARAILQGLYKAFWETDASLAEINPLILTGDGKVIALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_AZOSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Azoarcus sp. (strain BH72) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.621e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E Y A + DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD  A ++  G+    A    A++  KKLY  + E+D +L EINPL       + A DA
Sbjct:  100 EGADIKKEYYVAALTDRATQKVAMMASSEGGMDIEEVAHNTPEKIIKVFVDPLAGLTDAQAIELAKGIGVPEASIPQAVDTFKKLYTCYMETDASLAEINPLILEGNGNIKALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURP6 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 668) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURP1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 1710b) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURP0 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 1106a) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURMS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain SAVP1) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDA 214
[Close]
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURM9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain NCTC 10229) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3 
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDA 214
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_BURXL3.621e-1332.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURPP3.621e-1332.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AZOSB3.621e-1334.78Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURPS4.729e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP64.729e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP14.729e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP04.729e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURMS4.729e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURMA4.729e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURM94.729e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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