CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:630..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURM7 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain NCTC 10247) GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DA
Sbjct:  100 EGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BARQU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella quintana GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 39/118 (33.05%), Postives = 59/118 (50.00%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ +   +  E+Y ++++DR       +   +GG  IE +AE+ P  I+ +P+D   G+T  D  ++ D L      R D  +    LYK FCE D +LLEINPL       L   DA
Sbjct:  107 YIEDGADIERELYLSLLVDRAVGRVAFVVSMEGGMDIETVAEETPEKILTLPVDPVQGVTSADCKRLCDALELHDNARKDGEKLFPILYKAFCEKDMSLLEINPLIVMKDGHLRVLDA 224          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BACTN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacteroides thetaiotaomicron GN=sucC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E + +  E Y +  +DR T   I++  + GG  IE++A + P  I++  ID F G+ D  A +    L P +         ++ LYK+F E+D +L+E+NPLA T+   L+A DA
Sbjct:   93 EAVDIAAEYYVSFTIDRNTRSVILMMSASGGMDIEEVARQSPEKIIRYAIDPFIGLPDYLARRFAFSLFPHIEQAGRMAAILQALYKIFMENDASLVEVNPLALTAKGILMAIDA 207          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: MTKA_RHILO (Probable malate--CoA ligase subunit beta OS=Rhizobium loti GN=mtkA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.729e-13
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            YL E + +  E+Y   +LDRK    +I+  + GG  IED+ EK PN I++  +D   G+    A ++  GL         A E +   Y++F + D ++LEINPL  T    L+A DA
Sbjct:   97 YLEEAVDIAQELYVGFVLDRKEERVMIVASAAGGMEIEDIVEKEPNSILRTSVDPGVGMQRFQAREIAFGLGLDHNLIGKATETIFSCYQVFRDYDASMLEINPLVVTRDGNLIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_NITSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nitratiruptor sp. (strain SB155-2) GN=sucC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.176e-13
Identity = 39/118 (33.05%), Postives = 63/118 (53.39%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E   +  E Y  ++LDR +  P+++  ++GG  IE++A K P  I+KV ID   G       K+  GL     +    I+  + LYK++ + D  L+EINPL +T   + +A DA
Sbjct:   97 YVEEGADIQKEYYLGMVLDRSSEMPVMMASTEGGMEIEEVAAKTPEKIIKVAIDPTIGFQGFHGRKLAFGLGLAKEEIRPFIQFAEALYKVYMDKDANLIEINPLIKTGDGRFLALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_NEOSM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Neorickettsia sennetsu (strain Miyayama) GN=sucC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.176e-13
Identity = 42/112 (37.50%), Postives = 61/112 (54.46%), Query Frame = -3
Query:    2 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 337
            S++ E Y ++++DR+ A   II   +GG  IE++A   P  I KV +D+  GI+D  A K+   L   +A        VKKLY LF   D + +EINPL   S  + +A DA
Sbjct:  106 SILKEYYLSMVVDRENAKVAIIASEEGGMDIEEIARSTPEKIKKVFVDLSIGISDFHARKIGFELGLSLAQIKQFTPLVKKLYALFVTRDASQVEINPLIANSKGEFIALDA 217          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURM1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=sucC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.176e-13
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   ++VA DA
Sbjct:  100 EGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDSQA----DDLATKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVVALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_RICM5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia massiliae (strain Mtu5) GN=sucC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+     ++ E YF+I+ DR  +    I  ++GG  IE++AEK P  I+K  +D   G+ D     +   L  K        E VK +Y  F E+D T +EINPL   S   L+A DA
Sbjct:   97 YIESGCDILKEYYFSIVFDRSASCITFIASTEGGVDIEEIAEKTPEKIIKFSVDPATGLQDFHMRGIAYELGFKDNQAKQMKEIVKSVYNAFIETDATQIEINPLIVNSDGNLLALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_AKKM8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=sucC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            + E + L  E YFAI+ DR    P+I+  ++GG  IE++A   P  I++  I+   GI    A K+   L         A + +  +YKLF   DC+L+EINPL  T+  ++ A DA
Sbjct:  105 VAEAVDLKKECYFAILQDRARECPVIVASTEGGMDIEEVAATRPEAIIREHINPALGILPFQALKIAVALELTGPLLRQATKLITNVYKLFTALDCSLVEINPLVVTTDDRVCALDA 221          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC2_STRCO (Succinyl-CoA ligase [ADP-forming] subunit beta-2 OS=Streptomyces coelicolor GN=sucC2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = -3
Query:    5 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 352
            L E   +  E Y + +LDR + G + I  ++GGT IE++A + P  + ++P+D   G+    A ++ D  GL P+  D       + +L+K+    D  L+E+NPL  T+  ++VA D
Sbjct:   90 LAEPCEIEREFYVSYVLDRASGGFLAIASAEGGTEIEEVAARRPEAVARIPVDPATGVHTATAVRIADAAGLPPQTVD------TLVRLWKVLVREDALLVEVNPLVRTAEGRIVALD 201          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_BURM74.729e-1335.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARQU4.729e-1333.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACTN4.729e-1333.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
MTKA_RHILO4.729e-1334.75Probable malate--CoA ligase subunit beta OS=Rhizob... [more]
SUCC_NITSB6.176e-1333.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NEOSM6.176e-1337.50Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURM16.176e-1336.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICM58.067e-1334.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AKKM88.067e-1335.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC2_STRCO8.067e-1331.36Succinyl-CoA ligase [ADP-forming] subunit beta-2 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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