CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_WOLSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Wolinella succinogenes GN=sucC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.054e-12
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E L +  E Y  I+LDR    P+I+   +GG  IE++A+  PN I+KV +D   G       K+   L          ++    L++L+ + D  ++EINPL  TS K+ VA DA
Sbjct:   97 YVEEGLGIEREYYLGIVLDRSLEMPVIMASRQGGVDIEEVAKNSPNEIIKVAVDPMIGFRPFHGRKLAFALGLAKEQVGLFVDFCTSLFRLYVQKDAEIVEINPLVFTSCKRFVALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURCM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=sucC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.054e-12
Identity = 42/119 (35.29%), Postives = 69/119 (57.98%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   +++A DA
Sbjct:  100 EGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURA4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia ambifaria (strain MC40-6) GN=sucC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.054e-12
Identity = 42/119 (35.29%), Postives = 69/119 (57.98%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   +++A DA
Sbjct:  100 EGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVIALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_PROAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Propionibacterium acnes GN=sucC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.797e-12
Identity = 34/116 (29.31%), Postives = 66/116 (56.90%), Query Frame = -3
Query:    5 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 352
            + E   +  E YF+I+LDR     + +   +GG  IE LA++ P  + KVP+D  +G+ D  A +++       ++++  +  V KL++ + + D TL+E+NP+ +T   +++A D
Sbjct:   91 VAEGADIAEEYYFSILLDRGERRYLAMCSREGGMDIETLAKERPEALAKVPVDPIDGVDDAKAREILSEAGFPDSEQDAIVPAVLKLWETYRDEDATLVEVNPMIKTGDGRILAID 206          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_LEPBA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=sucC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.797e-12
Identity = 38/117 (32.48%), Postives = 59/117 (50.43%), Query Frame = -3
Query:    5 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 355
            YL + L +  E Y +I+LDR     II+  ++GG  IE++AE +P  I+K+ ID   GI      ++   L      +      V  +Y  + + D  LLEINPL  T   +++A D
Sbjct:   99 YLEQGLEIAKEYYLSILLDRAIRKTIIMASTEGGMEIEEVAETHPEKIIKIQIDPGIGIQGSQVRELAFALGIPTEAQKSFTALVNSVYNAYIKEDAALLEINPLILTKQNEIIAGD 215          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_CHLFF (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydophila felis (strain Fe/C-56) GN=sucC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.797e-12
Identity = 35/113 (30.97%), Postives = 66/113 (58.41%), Query Frame = -3
Query:    2 LSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 340
            +++ +E Y A+++DRK   P I+    GG  IE++A+KYP+ ++ VP+     I +    +++  +  +       ++ +KKL + F ++D +LLEINPL  T  ++L+  DA
Sbjct:  102 VNIASEYYLAVIMDRKNRCPAIMLSKAGGMDIEEVAQKYPDQLLTVPLTPSARIYNYQLRQIIKFMNWEGDTGKQGVQLIKKLVQCFYDNDASLLEINPLVLTQEEELLVLDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_CHLCV (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydophila caviae GN=sucC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.797e-12
Identity = 36/113 (31.86%), Postives = 64/113 (56.64%), Query Frame = -3
Query:    2 LSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 340
            +++  E Y A+++DRK   P I+    GG  IE++A+KYP+ ++ VP+  F  + +    +++  +  +   R    + +KKL + F ++D +LLEINPL  T    L+  DA
Sbjct:  102 VNIAAEYYLAVIMDRKNRCPAIMLSKAGGVDIEEVAQKYPDQLLTVPLTPFARLYNYQIRQIIKFMNWEGDIRKQGAQLIKKLVQCFYDNDASLLEINPLVLTQEGDLLVLDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURVG (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=sucC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.797e-12
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   ++ A DA
Sbjct:  100 EGADIKQELYVSLVVDRVSQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARTILQGLYKAFWETDASLAEINPLNVSGDGKVTALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_BURCJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=sucC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.797e-12
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = -3
Query:    2 EKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADA 346
            E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   ++ A DA
Sbjct:  100 EGADIKQELYVSLVVDRVSQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVTALDA 214          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCC_RENSM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=sucC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.347e-12
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = -3
Query:    5 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAAD 352
            + +   +  E YF+++LDR     + +   +GG  IE LA + P  + ++ +D   GI    A ++VD  G A  V D    IE +KKL+ +F + D TL+E+NPL +T   +++A D
Sbjct:   90 IAQGADIAEEYYFSVLLDRANRNYLAMCSVEGGVEIEVLAVERPEALARIAVDPAVGIDQAKAEEIVDAAGFAADVLD--GVIETIKKLWDVFQKEDATLVEVNPLVKTGDGRILALD 205          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCC_WOLSU1.054e-1233.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURCM1.054e-1235.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURA41.054e-1235.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PROAC1.797e-1229.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEPBA1.797e-1232.48Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLFF1.797e-1230.97Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLCV1.797e-1231.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURVG1.797e-1235.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURCJ1.797e-1235.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RENSM2.347e-1233.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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