CN184499

Overview
NameCN184499
Unique NameCN184499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9805 contig Csv1_Contig9805:266..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184499 vs. ExPASy Swiss-Prot
Match: MYCT_HUMAN (Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 3 
Query:    6 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTQIEILIGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYALMIAPVYTAELSP 356
            A+ +++   L GYD GV+SGA L +K    +     E+L+      + + +LA G  +   GRR  I+                 N   L+ GR V G+G+G A M  PVY AE+SP
Sbjct:   66 AVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 182
The following BLAST results are available for this feature:
BLAST of CN184499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MYCT_HUMAN4.393e-1132.48Proton myo-inositol cotransporter OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184499 ID=CN184499; Name=CN184499; organism=Citrus sinensis; type=EST; length=362bp
GCGGTGCCATTTTGGCTTCCATGACTTCAATCTTACTAGGTTATGACATT
GGAGTAATGAGTGGAGCTGCACTCTACATCAAAGACGACTTTAAAGTCAG
TGACACACAAATCGAGATCTTAATTGGAATCTTGAATATTTACTCACTCA
TCGGCTCACTGGCCGCCGGCAGAACCTCCGACTGGATTGGCCGCCGGTAC
ACTATCGTGTTAGCCGGGGCCATCTTCTTCGCCGGAGCGCTGCTCATGGG
GTTCGCCACAAACTATGCTTTCCTCATGGGGGGTCGCTTCGTCGCCGGTG
TCGGCGTCGGATACGCTCTCATGATCGCTCCCGTTTACACAGCTGAACTC
TCTCCGGCTTCC
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