CN184478

Overview
NameCN184478
Unique NameCN184478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13508 contig Csv1_Contig13508:510..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184478 vs. ExPASy Swiss-Prot
Match: CAMT1_DICDI (Probable caffeoyl-CoA O-methyltransferase 1 OS=Dictyostelium discoideum GN=omt5 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.884e-11
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = -2 
Query:   52 SFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGVTICRRI 324
            ++DF+F+DADK  Y  Y++  ++L++ GG+I  DN L +G  VA P+A +   +   R     LN  + AD R+   MLP+ DG+T+  +I
Sbjct:  144 TYDFVFIDADKTGYDTYYELSLKLIRKGGIIAIDNVLQHGR-VADPNANVEPNLVAIR----ALNDKILADKRVTKTMLPIADGITLVTKI 229
The following BLAST results are available for this feature:
BLAST of CN184478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CAMT1_DICDI9.884e-1137.36Probable caffeoyl-CoA O-methyltransferase 1 OS=Dic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005J06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184478 ID=CN184478; Name=CN184478; organism=Citrus sinensis; type=EST; length=325bp
CCGGTCATCGGCGGCGGACCCCCTCAGAGAATTGGTTTAGGCATTTCACT
TGATCCGACGGCAGATAGTGACTCCATCGCCAACGGGGAGCATGCAGATT
TCAATCCTGGGGTCAGCAGCAAGGGCCTTGTTGAGCTCCAAGACGAAGTC
TCGGTAATACCTAACGTACTTCCTAAGGGGAGCATCAGGTGGTGCCACGA
CGGATCCGTTCCATAGGGTGTTGTCGTACCCGATCACCCCTCCAACCTTC
ACCAACTCAATCAACCTCTTGTGGTAGTTTAGGTAGTTGTCCTTATCAGC
GTCCACAAATATGAAGTCAAAGGAC
back to top