CN184476

Overview
NameCN184476
Unique NameCN184476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig121 contig Csv1_Contig121:409..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIL_XENLA (Ferritin light chain, oocyte isoform OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMV---GKGHGVWHFDQMLLHE 430
            YFDRD++AL                     +++QN RGG+V L  + +P    D  E G+   AME+AL+LEK  N+ +L L  +A  + DP M D++E EFL E+V+ I K+  +++ LR V    +G G + FD++ L E
Sbjct:   39 YFDRDDVALSKFSKFFRELSEKKRDHAEDFLKFQNKRGGRVVLQDVKKP----DDDEWGNGTKAMEVALNLEKSINQAVLDLHKIATDHTDPHMQDYLEHEFLEEEVKLIKKLGDHLTNLRRVKAAEEGMGEYLFDKLTLGE 176          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_TRIVU (Ferritin heavy chain OS=Trichosurus vulpecula GN=FTH1 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 52/144 (36.11%), Postives = 75/144 (52.08%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHEGD 436
            YFDRD++AL+                    M+ QN RGG++ L  I +P    D  +    L AME AL LEK  N+ LL L  +A   NDP + DF+E+ +L EQV+AI ++  +V+ LR +G    G   + FD+  L + D
Sbjct:   41 YFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLDEQVKAIKQLGDHVTNLRKMGAPDSGMAEYLFDKHTLGDSD 180          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_MOUSE (Ferritin heavy chain OS=Mus musculus GN=Fth1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 52/144 (36.11%), Postives = 75/144 (52.08%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHEGD 436
            YFDRD++AL+                    M+ QN RGG++ L  I +P    D  +    L AME AL LEK  N+ LL L  +A   NDP + DF+E+ +L EQV++I ++  +V+ LR +G    G   + FD+  L  GD
Sbjct:   41 YFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETYYLSEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDKHTLGHGD 180          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_BOVIN (Ferritin heavy chain OS=Bos taurus GN=FTH1 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMV---GKGHGVWHFDQMLLHEGDA 439
            YFDRD++AL+                    M+ QN RGG++ L  I +P    D  +  + L AME AL LE+  N+ LL L  +A   NDP + DF+E+ +L EQVEAI ++  +++ LR +   G G   + FD+  L   ++
Sbjct:   41 YFDRDDVALKNFAKYFLHQSHEEREHAERLMKLQNQRGGRIFLQDIKKP----DRDDWENGLTAMECALCLERSVNQSLLELHKLATEKNDPHLCDFIETHYLNEQVEAIKELGDHITNLRKMGAPGSGMAEYLFDKHTLGHSES 181          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_PONAB (Ferritin heavy chain OS=Pongo abelii GN=FTH1 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/144 (37.50%), Postives = 77/144 (53.47%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHEGD 436
            YFDRD++AL+                    M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL L  +A   NDP + DF+E+ +L EQV+AI ++  +V+ LR +G    G   + FD+  L + D
Sbjct:   41 YFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP--DCDDWESG--LNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFLETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 180          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_FELCA (Ferritin heavy chain OS=Felis catus GN=FTH1 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHEGDA 439
            YFDRD++AL+                    M+ QN RGG++ L  I +P    D  +  + L AME AL LEK  N+ LL L  +A   NDP + DF+E+ +L EQV++I ++  +V+ LR +G    G   + FD+  L   D+
Sbjct:   41 YFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGTPESGMAEYLFDKHTLGNSDS 181          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_RAT (Ferritin heavy chain OS=Rattus norvegicus GN=Fth1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHEGD 436
            YFDRD++AL+                    M+ QN RGG++ L  I +P    D  +    L AM  AL LEK  N+ LL L  +A   NDP + DF+E+ +L EQV++I ++  +V+ LR +G    G   + FD+  L  GD
Sbjct:   41 YFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMRCALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTLGHGD 180          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_CANFA (Ferritin heavy chain OS=Canis familiaris GN=FTH1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 51/144 (35.42%), Postives = 75/144 (52.08%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHEGD 436
            YFDRD++AL+                    M+ QN RGG++ L  I +P    D  +  + L AME AL LEK  N+ LL L  +A   NDP + DF+E+ +L EQV++I ++  +V+ LR +G    G   + FD+  L   D
Sbjct:   41 YFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTLGNSD 180          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_SHEEP (Ferritin heavy chain OS=Ovis aries GN=FTH1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVGK---GHG 397
            YFDRD++AL+                    M+ QN RG ++ L  I +P    D  +  + L AME AL LE+  N+ LL L  +A   NDP + DF+E+ +L EQVEAI ++  +++ LR +G    GHG
Sbjct:   41 YFDRDDVALKNFAKYFLHQSHEEREHAERLMKLQNQRGARIFLQDIKKP----DRDDWENGLNAMECALCLERSVNQSLLELHKLATEKNDPHLCDFIETHYLNEQVEAIKELGDHITNLRKMGALWIGHG 167          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRI1_RANCA (Ferritin, higher subunit OS=Rana catesbeiana PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHE 430
            YFDRD+IAL  +                  M+ QN RGG++ L  + +P  +    E G+ L AM+ AL LEK  N+ LL L  V     DP + DF+E+E+L EQV++I ++  Y++ L+ +G    G G + FD+  + E
Sbjct:   37 YFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQNKRGGRIVLQDVKKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDPHLCDFLETEYLEEQVKSIKQLGDYITNLKRLGLPQNGMGEYLFDKHTMGE 174          
The following BLAST results are available for this feature:
BLAST of CN184476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
FRIL_XENLA1.004e-1635.92Ferritin light chain, oocyte isoform OS=Xenopus la... [more]
FRIH_TRIVU1.004e-1636.11Ferritin heavy chain OS=Trichosurus vulpecula GN=F... [more]
FRIH_MOUSE1.004e-1636.11Ferritin heavy chain OS=Mus musculus GN=Fth1 PE=1 ... [more]
FRIH_BOVIN1.004e-1634.48Ferritin heavy chain OS=Bos taurus GN=FTH1 PE=2 SV... [more]
FRIH_PONAB1.312e-1637.50Ferritin heavy chain OS=Pongo abelii GN=FTH1 PE=2 ... [more]
FRIH_FELCA1.312e-1635.17Ferritin heavy chain OS=Felis catus GN=FTH1 PE=2 S... [more]
FRIH_RAT1.713e-1635.42Ferritin heavy chain OS=Rattus norvegicus GN=Fth1 ... [more]
FRIH_CANFA1.713e-1635.42Ferritin heavy chain OS=Canis familiaris GN=FTH1 P... [more]
FRIH_SHEEP2.237e-1636.64Ferritin heavy chain OS=Ovis aries GN=FTH1 PE=1 SV... [more]
FRI1_RANCA2.237e-1635.21Ferritin, higher subunit OS=Rana catesbeiana PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184476 ID=CN184476; Name=CN184476; organism=Citrus sinensis; type=EST; length=693bp
CATTCTGTATGCGTACTTTGATCGGGATAATATTGCTCTGAGAGGCCTTG
CCAAATTTTTCAAGGAGTCCAGTGAAGAAGAAAGGGAACATGCTGAGAAG
TTTATGGAGTATCAGAACTTGCGCGGTGGAAAAGTAAAACTGCACTCCAT
AATGCAGCCCCCTTCGGAGTTTGATCATGCAGAGAAAGGGGATGCCTTGT
ATGCAATGGAACTAGCATTGTCCCTGGAGAAGCTAACAAACGAGAAGCTT
CTGAGCCTGCGCAGTGTGGCGGATAGAAACAATGATCCCCAAATGGGAGA
TTTTGTCGAGAGTGAATTTTTGGGTGAGCAGGTTGAAGCAATTAACAAGA
TCGCTAAATATGTTTCTCAACTTAGGATGGTTGGGAAAGGCCACGGAGTA
TGGCACTTCGATCAAATGCTTCTCCACGAGGGTGATGCTGCATGATGAAG
AACCATATTGTTACATTTCTTTGTGGTTTAGTCAACTCTTTGCTGCTAAA
TGTTCTGAAGTATCTCTGCCACAGGAGGTTGAATGTGTTGTCAAAAAATA
AGCTGAAACAGTGATAAGTCCTACAAAGTCAATACTCAATAGCCTCCTTG
CTTTATCATATTAGTGTGGTCGCTTTTAGATAGTCTTTTTTATGGTGCTT
TTTCTTTATTTAGTAACAGACAGTGTGAAGGGATCTAATAGTT
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