CN184476

Overview
NameCN184476
Unique NameCN184476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH2_XENLA (Ferritin heavy chain 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHE 430
            YFDRD++AL  +                  ++YQN RGG+V L  I +P  +    E G+ L A + AL LEK  N+ LL L  +A    D  + DF+ESE+L EQV+A+ ++  Y++ L+ +G    G G + FD+  L E
Sbjct:   37 YFDRDDVALHHVAKFFKEQSHEEREHAEKFLKYQNKRGGRVVLQDIKKPERD----EWGNTLEATQAALQLEKTVNQALLDLHKLASDKVDAHLCDFLESEYLEEQVKAMKQLGDYITNLKRLGVPQNGMGEYLFDKHTLGE 174          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_CRIGR (Ferritin heavy chain OS=Cricetulus griseus GN=FTH1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHEGDA 439
            YFDRD++AL+                    M+ QN RGG++ L  I +P    D  +    L AME AL LEK  N+ LL L  +A   NDP + DF+E+ +L EQV++I ++  +V+ LR +G    G   + FD+  L   ++
Sbjct:   46 YFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDKHTLGHSES 186          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH_SALSA (Ferritin, heavy subunit OS=Salmo salar PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLL 424
            YFDRD+ AL                     M+ QN RGG++ L  + +P  +    E G  + A+E +L LEK  N+ LL L  V   +NDP M DF+E+ +L EQV++I ++  +V+ LR +G    G   + FD+  L
Sbjct:   37 YFDRDDQALHNFAKFFKNQSHEEREHAEKLMKVQNQRGGRIFLQDVKKPEKD----EWGSGVEALESSLQLEKSVNQSLLDLHKVCSEHNDPHMCDFIETHYLDEQVKSIKELGDWVTNLRRMGAPQNGMAEYLFDKHTL 172          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRI3_RANCA (Ferritin, lower subunit OS=Rana catesbeiana PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = 2
Query:   11 AYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVGKGH 394
            +YF+RD++AL                     +EYQN RGG+V L S+ +P  +    +  + L A++ AL L+K  N+ LL L +VA   +DP M DF+ES +L E VE I K+  +++ L+ +   H
Sbjct:   36 SYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQSVEKPERD----DWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSH 159          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRI_PACLE (Ferritin OS=Pacifastacus leniusculus PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 50/137 (36.50%), Postives = 73/137 (53.28%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGVWHFDQML 421
            YFDRD+I+L G                   M+YQN RG ++ L +I  P  +    E G+   A++ AL LE   N+ LL L + A + NDP + + +E EFL EQVE+I KI   +++L+  G  G G + FD+ L
Sbjct:   36 YFDRDDISLPGASKFFKDSSDEEREHGQKLMKYQNKRGARIVLQAIAAPSLQ----EWGNLHDALQAALDLENEVNQSLLDLDATASKINDPHLTNMLEGEFLEEQVESIEKIGNLITRLKRAGTSGLGEFLFDKEL 168          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIM_SALSA (Ferritin, middle subunit OS=Salmo salar PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQL 373
            YF RD++AL G                   + +QN RGG++ L  I +P  +    E G+ L AM+ AL LEK  N+ LL L  +A    DP + DF+E+ +L EQVEAI K+  +++ L
Sbjct:   37 YFSRDDVALPGFAHFFKENSEEEREHADKLLSFQNKRGGRILLQDIKKPERD----EWGNGLEAMQCALQLEKNVNQALLDLHKIASDKVDPHLCDFLETHYLNEQVEAIKKLGDHITNL 152          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIH3_XENLA (Ferritin heavy chain, oocyte isoform OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 46/142 (32.39%), Postives = 76/142 (53.52%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLLHE 430
            YFDRD++AL+                    M+ QN RGG++ L  I +P  +    E  + L A+E +L LEK  N+ +L L  ++  +NDP + DF+ES +L EQV+++ ++  +++ LR +G    G   + FD+  L E
Sbjct:   37 YFDRDDVALKNFAKYFLHQSHEEREHAEKLMKMQNQRGGRLFLQDIKKPERD----EWANGLEALECSLQLEKNVNQSILELHKLSTDHNDPHLCDFLESHYLDEQVKSMKELGDHITNLRRMGAPSNGLAEYLFDKHTLGE 174          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FHL19_HUMAN (Putative ferritin heavy polypeptide-like 19 OS=Homo sapiens GN=FTHL19 PE=5 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 47/124 (37.90%), Postives = 64/124 (51.61%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG 385
            YFD+D+ AL                     M  QNLRGG++ LH I +P  E    E G  L AME    LEK  N+ LL L  +A  N DPQ+ DF+E++FL +Q + I ++  Y+S L  +G
Sbjct:    4 YFDQDDAALEHFDRYFLRQSQEKREHAQELMSLQNLRGGRICLHDIRKP--EGQGWESG--LKAMECTFHLEKNINQSLLELHQLARENGDPQLCDFLENDFLNQQAKTIKELGGYLSNLHKMG 123          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FHL17_HUMAN (Ferritin heavy polypeptide-like 17 OS=Homo sapiens GN=FTHL17 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 53/140 (37.86%), Postives = 70/140 (50.00%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMV---GKGHGVWHFDQMLL 424
            YF+RD++AL                     M  QNLRGG + LH I +P  E    E G  L AME A  LEK  N+ LL L  +A    DPQ+  F+ES +L EQV+ I ++  YVS LR +     G   + FD++ L
Sbjct:   41 YFNRDDVALENFFRYFLRLSDDKMEHAQKLMRLQNLRGGHICLHDIRKP--ECQGWESG--LVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTL 176          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIM_TRENE (Ferritin, middle subunit OS=Trematomus newnesi PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQL 373
            YF RD++AL G                   + +QN RGG++ L  I +P  +    E G  L A++ +L LEK  N+ LL L  +A  + DP M DF+E+ +L EQVE+I K+  +++ L
Sbjct:   37 YFSRDDVALPGFAHFFKENSEEEREHADKLLTFQNSRGGRIFLQDIKKPERD----EWGSGLDALQSSLQLEKNVNQALLDLHKIASDHTDPHMCDFLETHYLNEQVESIKKLGDFITNL 152          
The following BLAST results are available for this feature:
BLAST of CN184476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
FRIH2_XENLA3.817e-1635.92Ferritin heavy chain 2 OS=Xenopus laevis PE=2 SV=1[more]
FRIH_CRIGR6.510e-1634.48Ferritin heavy chain OS=Cricetulus griseus GN=FTH1... [more]
FRIH_SALSA2.474e-1534.29Ferritin, heavy subunit OS=Salmo salar PE=2 SV=1[more]
FRI3_RANCA4.220e-1534.38Ferritin, lower subunit OS=Rana catesbeiana PE=1 S... [more]
FRI_PACLE5.511e-1536.50Ferritin OS=Pacifastacus leniusculus PE=1 SV=1[more]
FRIM_SALSA7.198e-1536.67Ferritin, middle subunit OS=Salmo salar PE=2 SV=1[more]
FRIH3_XENLA1.603e-1432.39Ferritin heavy chain, oocyte isoform OS=Xenopus la... [more]
FHL19_HUMAN2.735e-1437.90Putative ferritin heavy polypeptide-like 19 OS=Hom... [more]
FHL17_HUMAN2.735e-1437.86Ferritin heavy polypeptide-like 17 OS=Homo sapiens... [more]
FRIM_TRENE3.572e-1435.00Ferritin, middle subunit OS=Trematomus newnesi PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184476 ID=CN184476; Name=CN184476; organism=Citrus sinensis; type=EST; length=693bp
CATTCTGTATGCGTACTTTGATCGGGATAATATTGCTCTGAGAGGCCTTG
CCAAATTTTTCAAGGAGTCCAGTGAAGAAGAAAGGGAACATGCTGAGAAG
TTTATGGAGTATCAGAACTTGCGCGGTGGAAAAGTAAAACTGCACTCCAT
AATGCAGCCCCCTTCGGAGTTTGATCATGCAGAGAAAGGGGATGCCTTGT
ATGCAATGGAACTAGCATTGTCCCTGGAGAAGCTAACAAACGAGAAGCTT
CTGAGCCTGCGCAGTGTGGCGGATAGAAACAATGATCCCCAAATGGGAGA
TTTTGTCGAGAGTGAATTTTTGGGTGAGCAGGTTGAAGCAATTAACAAGA
TCGCTAAATATGTTTCTCAACTTAGGATGGTTGGGAAAGGCCACGGAGTA
TGGCACTTCGATCAAATGCTTCTCCACGAGGGTGATGCTGCATGATGAAG
AACCATATTGTTACATTTCTTTGTGGTTTAGTCAACTCTTTGCTGCTAAA
TGTTCTGAAGTATCTCTGCCACAGGAGGTTGAATGTGTTGTCAAAAAATA
AGCTGAAACAGTGATAAGTCCTACAAAGTCAATACTCAATAGCCTCCTTG
CTTTATCATATTAGTGTGGTCGCTTTTAGATAGTCTTTTTTATGGTGCTT
TTTCTTTATTTAGTAACAGACAGTGTGAAGGGATCTAATAGTT
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