CN184476

Overview
NameCN184476
Unique NameCN184476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIML_PAGBE (Ferritin, liver middle subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQL 373
            YF RD++AL G                   + +QN RGG++ L  I +P  +    E G  L A++ +L LEK  N+ LL L  +A  + DP M DF+E+ +L EQVE+I K+  +++ L
Sbjct:   37 YFSRDDVALPGFAHFFKENSDEEREHADKLLTFQNSRGGRIFLQDIKKPERD----EWGSGLDALQSSLQLEKNVNQALLDLHKIASDHTDPHMCDFLETHYLNEQVESIKKLGDFITNL 152          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIL_CANFA (Ferritin light chain OS=Canis familiaris GN=FTL PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 46/140 (32.86%), Postives = 72/140 (51.43%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLL 424
            YFDRD++AL G+                  ++ QN RGG+     + +P  +    E G  L AME AL LEK  N+ LL L ++     DP + DF+E+ FL E+V+ I K+  +++ LR +     G G + F+++ L
Sbjct:   37 YFDRDDVALEGVGHFFRELAEEKREGAERFLKMQNQRGGRALFQDVQKPSQD----EWGKTLDAMEAALLLEKSLNQALLDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLATPQAGLGEYLFERLTL 172          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FTMT_HUMAN (Ferritin, mitochondrial OS=Homo sapiens GN=FTMT PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG 385
            YF RD++AL                     M  QN RGG+++L  I +P  E D  E G  L+AME AL LEK  N+ LL L ++A    DP + DF+E+ +L EQV++I ++  +V  L  +G
Sbjct:  100 YFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKP--EQDDWESG--LHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMG 219          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIMS_PAGBE (Ferritin, spleen middle subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQL 373
            YF RD++AL G                   + +QN RGG++ L  I +P  +    E G+ +  M+ AL LEK  N+ LL L  +A    DP M DF+E+ +L EQVE+I K+  +++ L
Sbjct:   37 YFSRDDVALPGFAHFFKENSDEEREHADKLLTFQNSRGGRIFLQDIKKPERD----EWGNGVDVMQCALQLEKNVNQALLDLHKIASGKVDPHMCDFLETHYLNEQVESIKKLGDFITNL 152          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIL1_RAT (Ferritin light chain 1 OS=Rattus norvegicus GN=Ftl1 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMV 382
            +FDRD++AL G+                  ++ QN RGG+     + +P  +    E G  L AME AL+LEK  N+ LL L ++     DP + DF+ES FL ++V+ I K+  +++ LR V
Sbjct:   37 FFDRDDVALEGVGHFFRELAEEKREGAERLLKLQNERGGRALFQDVQKPSQD----EWGKTLEAMEAALALEKNLNQALLDLHALGSARTDPHLCDFLESHFLDKEVKLIKKMGNHLTNLRRV 155          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIL_RABIT (Ferritin light chain OS=Oryctolagus cuniculus GN=FTL PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLR 376
            YFDRD++AL G+                  ++ QN RGG+     + +P  +    E G  L AME AL+LEK  N+ LL L ++   + DP + DF+E+ FL E+V+ + K+  +++ +R
Sbjct:   37 YFDRDDVALEGVSHFFRELAEEKREAAERLLKMQNQRGGRALFQDVQKPSQD----EWGKTLNAMEAALALEKNLNQALLDLHALGSAHTDPHLCDFLENHFLDEEVKLLKKMGDHLTNIR 153          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIL_HORSE (Ferritin light chain OS=Equus caballus GN=FTL PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQL-RMVGK--GHGVWHFDQMLL 424
            YFDRD++AL G+                  ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL L ++     DP + DF+ES FL E+V+ I K+  +++ + R+VG   G G + F+++ L
Sbjct:   37 YFDRDDVALEGVCHFFRELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTL 172          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIL_PONAB (Ferritin light chain OS=Pongo abelii GN=FTL PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLL 424
            YFDRD++AL G+                  ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL L ++   + DP + DF+E+ FL E+V+ I K+  +++ L  +G    G G + F+++ L
Sbjct:   37 YFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSAHTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTL 172          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIL1_MOUSE (Ferritin light chain 1 OS=Mus musculus GN=Ftl1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 40/123 (32.52%), Postives = 65/123 (52.85%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMV 382
            +FDRD++AL G+                  +E+QN RGG+     + +P  +    E G    AME AL++EK  N+ LL L ++     DP + DF+ES +L ++V+ I K+  +++ LR V
Sbjct:   37 FFDRDDVALEGVGHFFRELAEEKREGAERLLEFQNDRGGRALFQDVQKPSQD----EWGKTQEAMEAALAMEKNLNQALLDLHALGSARTDPHLCDFLESHYLDKEVKLIKKMGNHLTNLRRV 155          
BLAST of CN184476 vs. ExPASy Swiss-Prot
Match: FRIL_HUMAN (Ferritin light chain OS=Homo sapiens GN=FTL PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 44/140 (31.43%), Postives = 72/140 (51.43%), Query Frame = 2
Query:   14 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLRSVADRNNDPQMGDFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGVWHFDQMLL 424
            YFDRD++AL G+                  ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL L ++     DP + DF+E+ FL E+V+ I K+  +++ L  +G    G G + F+++ L
Sbjct:   37 YFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTL 172          
The following BLAST results are available for this feature:
BLAST of CN184476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
FRIML_PAGBE3.572e-1435.00Ferritin, liver middle subunit OS=Pagothenia berna... [more]
FRIL_CANFA6.093e-1432.86Ferritin light chain OS=Canis familiaris GN=FTL PE... [more]
FTMT_HUMAN7.958e-1437.10Ferritin, mitochondrial OS=Homo sapiens GN=FTMT PE... [more]
FRIMS_PAGBE7.958e-1435.00Ferritin, spleen middle subunit OS=Pagothenia bern... [more]
FRIL1_RAT1.039e-1334.15Ferritin light chain 1 OS=Rattus norvegicus GN=Ftl... [more]
FRIL_RABIT1.357e-1333.06Ferritin light chain OS=Oryctolagus cuniculus GN=F... [more]
FRIL_HORSE1.773e-1332.86Ferritin light chain OS=Equus caballus GN=FTL PE=1... [more]
FRIL_PONAB3.024e-1331.43Ferritin light chain OS=Pongo abelii GN=FTL PE=2 S... [more]
FRIL1_MOUSE3.024e-1332.52Ferritin light chain 1 OS=Mus musculus GN=Ftl1 PE=... [more]
FRIL_HUMAN3.950e-1331.43Ferritin light chain OS=Homo sapiens GN=FTL PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184476 ID=CN184476; Name=CN184476; organism=Citrus sinensis; type=EST; length=693bp
CATTCTGTATGCGTACTTTGATCGGGATAATATTGCTCTGAGAGGCCTTG
CCAAATTTTTCAAGGAGTCCAGTGAAGAAGAAAGGGAACATGCTGAGAAG
TTTATGGAGTATCAGAACTTGCGCGGTGGAAAAGTAAAACTGCACTCCAT
AATGCAGCCCCCTTCGGAGTTTGATCATGCAGAGAAAGGGGATGCCTTGT
ATGCAATGGAACTAGCATTGTCCCTGGAGAAGCTAACAAACGAGAAGCTT
CTGAGCCTGCGCAGTGTGGCGGATAGAAACAATGATCCCCAAATGGGAGA
TTTTGTCGAGAGTGAATTTTTGGGTGAGCAGGTTGAAGCAATTAACAAGA
TCGCTAAATATGTTTCTCAACTTAGGATGGTTGGGAAAGGCCACGGAGTA
TGGCACTTCGATCAAATGCTTCTCCACGAGGGTGATGCTGCATGATGAAG
AACCATATTGTTACATTTCTTTGTGGTTTAGTCAACTCTTTGCTGCTAAA
TGTTCTGAAGTATCTCTGCCACAGGAGGTTGAATGTGTTGTCAAAAAATA
AGCTGAAACAGTGATAAGTCCTACAAAGTCAATACTCAATAGCCTCCTTG
CTTTATCATATTAGTGTGGTCGCTTTTAGATAGTCTTTTTTATGGTGCTT
TTTCTTTATTTAGTAACAGACAGTGTGAAGGGATCTAATAGTT
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