CN184461

Overview
NameCN184461
Unique NameCN184461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = -2
Query:  396 KRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDS 689
            KR++  TG ++ I GKGS++D  KE++LR  G   Y HL+D LH+LIE   P      R+  A E I++ L P  +  D I+++QLREL+ LN +  EDS
Sbjct:   89 KRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS--EDS 184          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = -2
Query:  411 KRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSN 689
            KR++  TG ++ I GKGS++D  KE++LR  G   Y HL+D LH+LIE   P      R+  A E I++ L P  +  D I+++QLREL+ LN +
Sbjct:   89 KRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = -2
Query:  411 KRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSN 689
            KR++  TG ++ I GKGS++D  KE++LR  G   Y HL+D LH+LIE   P      R+  A E I++ L P  +  D I+++QLREL+ LN +
Sbjct:   89 KRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = -2
Query:  411 KRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSN 689
            KR++  TG ++ I GKGS++D  KE++LR  G   Y HL++ LH+LIE   P      R+  A E I++ L P  +  D I+++QLREL+ LN +
Sbjct:   89 KRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          
The following BLAST results are available for this feature:
BLAST of CN184461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
KHDR2_HUMAN9.645e-1243.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_MOUSE1.260e-1142.11KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_RAT1.645e-1142.11KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_DANRE4.787e-1141.05KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005I21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184461 ID=CN184461; Name=CN184461; organism=Citrus sinensis; type=EST; length=690bp
TTATATATATATTCCACACTCCTCAAAGTTACTGACACAAGAATAAATCA
AATGAATGTATTAAGTTTACAGGAATAACTGACCTCCGCAAACCTAAAAT
TCAAGAACCAACTATATAATTCTTTTTAATGTCTTTCATTGTTGTTTTTC
TTCTTGTTCCAAAAGAAAACCAAAATATAAGAAAACCCACCAGAAGTCTC
ACCAGCAAGAACTGTTAGCCTAATCTTTGGTAGCTGTACTGAGCTGAGAG
GTATCAGACGGTATACTCAAGTTTGAAATTCTGGAGCAGGGTGAAAACCA
TTTGACAAAGTGATGGATATGAACTCTCAGCGTCCTGTTTTTGCACGTTT
CATTCCACTTGAATTGAACGGAGAAACACTGCCACTTGGCCCCGGGCTAT
CTTCTCTGAAATTTGAATTCAGCATTGCCAACTCACGCAACTGCTGCCTC
TTAATATAATCTTGTGACTCATCCACAGGTTTCAGCAATTCTTCTATAAT
CTCCTGCGCCTGTCTCAGCCTGATATCAACAATGTTGGCAGGTAAATCAG
CCTCAATTAAGATGTGAAGTGGATCATTGAGATGCTCATAGCCTGGCCTT
CCCCTTAGCTTATCTTCCTTGTCTGGATCCTTTATTGAGCCCTTCCCTCT
AATGTACACACGGCAGCCAGTAGTAGCTTCAACCCGTTTC
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