CN184458 | Citrus Genome Database

Overview


Name	CN184458
Unique Name	CN184458
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	534

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.357e-29
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

HSP 2 Score: 101.293 bits (251), Expect = 3.086e-21
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            K+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.079e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

HSP 2 Score: 102.449 bits (254), Expect = 1.385e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.079e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

HSP 2 Score: 100.523 bits (249), Expect = 5.264e-21
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            K KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   27 KQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.021e-29
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

HSP 2 Score: 101.293 bits (251), Expect = 3.086e-21
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.021e-29
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

HSP 2 Score: 101.293 bits (251), Expect = 3.086e-21
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.251e-29
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

HSP 2 Score: 100.908 bits (250), Expect = 4.030e-21
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            K KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   27 KTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.251e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

HSP 2 Score: 99.7525 bits (247), Expect = 8.978e-21
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            K KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.859e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

HSP 2 Score: 101.293 bits (251), Expect = 3.086e-21
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.859e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

HSP 2 Score: 101.293 bits (251), Expect = 3.086e-21
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN184458 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 6.859e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = -1

Query:  187 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 384
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

HSP 2 Score: 100.523 bits (249), Expect = 5.264e-21
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = -1

Query:  385 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 534
            KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

The following BLAST results are available for this feature:

BLAST of CN184458 vs. ExPASy Swiss-Prot

BLAST of CN184458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
UBIQ_ACECL	2.357e-29	95.45	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	3.079e-29	96.97	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_ACACA	3.079e-29	96.97	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_GEOCY	4.021e-29	95.45	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	4.021e-29	95.45	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_EUPEU	5.251e-29	95.45	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]
UBIQ_AGLNE	5.251e-29	95.45	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_XENLA	6.859e-29	95.45	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_SPOFR	6.859e-29	95.45	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_SHEEP	6.859e-29	95.45	Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_0005I19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I19, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184458 ID=CN184458; Name=CN184458; organism=Citrus sinensis; type=EST; length=534bp
AACTAGAGATTTTTATTCGAAAGCATAACTTGTTCAACAAACAACTTATA
AAAACAAAAGACAATATTATCAATGATAACTAGTCTTCTTCAAGAAGACA
AGACAACATAGCGACCAGCTTGAACAGAAAATACATTGACACGTCCCTCA
GAAACCACCACCACGGAGACGGAGGACGAGATGAAGAGTGGACTCCTTCT
GAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCG
AAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTT
GGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCG
TCTTCCCGGTCAATGTCTTGACAAAAATCTGCATGCCACCCCTCAGACGC
AACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGCGT
CCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCG
GCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTT