CN184455

Overview
NameCN184455
Unique NameCN184455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:929..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTM_HELTB (Actin, cytoskeletal OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.638e-47
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIADRM KEITALAPSSMKIK++APPERKYSVWIGGSIL
Sbjct:  270 MESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSIL 347

HSP 2 Score: 62.003 bits (149), Expect = 6.638e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTM_HELER (Actin, cytoskeletal OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.638e-47
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIADRM KEITALAPSSMKIK++APPERKYSVWIGGSIL
Sbjct:  270 MESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSIL 347

HSP 2 Score: 62.003 bits (149), Expect = 6.638e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTM_LYTPI (Actin, muscle (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.716e-47
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIADRM KEITALAPSSMKIK++APPERKYSVWIGGSIL
Sbjct:   66 MESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSIL 143

HSP 2 Score: 62.003 bits (149), Expect = 6.716e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  144 ASLSTFQQMWISKQEYDESGPSIVHRKCF 172
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTC_BRALA (Actin, cytoplasmic OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.652e-47
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+ G+HETTYNSIMKCD+DIRKDLY N VLSGG+TMFPGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  269 MESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 346

HSP 2 Score: 62.003 bits (149), Expect = 8.652e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  347 ASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTC_BRAFL (Actin, cytoplasmic OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.652e-47
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+ G+HETTYNSIMKCD+DIRKDLY N VLSGG+TMFPGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  269 MESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 346

HSP 2 Score: 62.003 bits (149), Expect = 8.652e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  347 ASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTC_BRABE (Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.652e-47
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+ G+HETTYNSIMKCD+DIRKDLY N VLSGG+TMFPGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  269 MESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 346

HSP 2 Score: 62.003 bits (149), Expect = 8.652e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  347 ASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTB3_TAKRU (Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.652e-47
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME++GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  269 MESSGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 346

HSP 2 Score: 62.003 bits (149), Expect = 8.652e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  347 ASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT3A_HELAM (Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.652e-47
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  270 MEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 347

HSP 2 Score: 62.003 bits (149), Expect = 8.652e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT1_SCHMA (Actin-1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.128e-46
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEA+GIHETTYNSIMKCDVDIRKDLY N VLSGGSTM+PGIADRM KEI+ALAPS+MKIK+VAPPERKYSVWIGGSIL
Sbjct:  270 MEASGIHETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSIL 347

HSP 2 Score: 60.4622 bits (145), Expect = 1.128e-46
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGP IVHRKCF
Sbjct:  348 ASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT_CRYNV (Actin OS=Cryptococcus neoformans var. grubii PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.128e-46
Identity = 68/78 (87.18%), Postives = 76/78 (97.44%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            +EAAGIHETTYNSIMKCD+DIRKDLYGNIV+SGG+TM+ GIADRM KEITALAPSSMK+K+V+PPERKYSVWIGGSIL
Sbjct:  269 LEAAGIHETTYNSIMKCDLDIRKDLYGNIVMSGGTTMYNGIADRMQKEITALAPSSMKVKIVSPPERKYSVWIGGSIL 346

HSP 2 Score: 61.6178 bits (148), Expect = 1.128e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  347 ASLSTFQQMWIAKSEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of CN184455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
ACTM_HELTB6.638e-4787.18Actin, cytoskeletal OS=Heliocidaris tuberculata PE... [more]
ACTM_HELER6.638e-4787.18Actin, cytoskeletal OS=Heliocidaris erythrogramma ... [more]
ACTM_LYTPI6.716e-4787.18Actin, muscle (Fragment) OS=Lytechinus pictus PE=3... [more]
ACTC_BRALA8.652e-4785.90Actin, cytoplasmic OS=Branchiostoma lanceolatum PE... [more]
ACTC_BRAFL8.652e-4785.90Actin, cytoplasmic OS=Branchiostoma floridae PE=2 ... [more]
ACTC_BRABE8.652e-4785.90Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 ... [more]
ACTB3_TAKRU8.652e-4787.18Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc... [more]
ACT3A_HELAM8.652e-4788.46Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=... [more]
ACT1_SCHMA1.128e-4689.74Actin-1 OS=Schistosoma mansoni PE=2 SV=1[more]
ACT_CRYNV1.128e-4687.18Actin OS=Cryptococcus neoformans var. grubii PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005I15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184455 ID=CN184455; Name=CN184455; organism=Citrus sinensis; type=EST; length=393bp
GAGGATGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGA
AGTGTGATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGT
GGGGGTTCAACTATGTTCCCCGGTATTGCCGACCGTATGAGCAAGGAAAT
CACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAG
AGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTTGCATCCCTCAG
CACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTC
CATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGG
TGAGTTCTTTTTTTCCCATTTAGTTGGTTTTTTGTGTCTCGTT
back to top