CN184455 | Citrus Genome Database

Overview


Name	CN184455
Unique Name	CN184455
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	393

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTSB_TAKRU (Actin, alpha skeletal muscle B OS=Takifugu rubripes GN=acta1b PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  271 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 348

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTN_STYCL (Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  272 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 349

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  350 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 378

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTM_STYCL (Actin, muscle OS=Styela clava PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  272 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 349

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  350 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 378

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTC_XENLA (Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN=actc1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  271 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 348

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTC_RAT (Actin, alpha cardiac muscle 1 OS=Rattus norvegicus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  271 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 348

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTC_MOUSE (Actin, alpha cardiac muscle 1 OS=Mus musculus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  271 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 348

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTC_HUMAN (Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=ACTC1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  271 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 348

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTC_CHICK (Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=ACTC1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  271 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 348

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTC_BOVIN (Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACTC1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  271 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 348

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACTA_RAT (Actin, aortic smooth muscle OS=Rattus norvegicus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-46
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2

Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            ME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSIL
Sbjct:  271 MESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 348

HSP 2 Score: 60.8474 bits (146), Expect = 1.915e-46
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

The following BLAST results are available for this feature:

BLAST of CN184455 vs. ExPASy Swiss-Prot

BLAST of CN184455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417


Match Name	E-value	Identity	Description
ACTSB_TAKRU	1.915e-46	87.18	Actin, alpha skeletal muscle B OS=Takifugu rubripe...	[more]
ACTN_STYCL	1.915e-46	87.18	Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1	[more]
ACTM_STYCL	1.915e-46	87.18	Actin, muscle OS=Styela clava PE=2 SV=1	[more]
ACTC_XENLA	1.915e-46	87.18	Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN...	[more]
ACTC_RAT	1.915e-46	87.18	Actin, alpha cardiac muscle 1 OS=Rattus norvegicus...	[more]
ACTC_MOUSE	1.915e-46	87.18	Actin, alpha cardiac muscle 1 OS=Mus musculus GN=A...	[more]
ACTC_HUMAN	1.915e-46	87.18	Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=A...	[more]
ACTC_CHICK	1.915e-46	87.18	Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=...	[more]
ACTC_BOVIN	1.915e-46	87.18	Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACT...	[more]
ACTA_RAT	1.915e-46	87.18	Actin, aortic smooth muscle OS=Rattus norvegicus G...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0005I15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I15, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184455 ID=CN184455; Name=CN184455; organism=Citrus sinensis; type=EST; length=393bp
GAGGATGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGA
AGTGTGATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGT
GGGGGTTCAACTATGTTCCCCGGTATTGCCGACCGTATGAGCAAGGAAAT
CACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAG
AGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTTGCATCCCTCAG
CACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTC
CATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGG
TGAGTTCTTTTTTTCCCATTTAGTTGGTTTTTTGTGTCTCGTT