DC887334

Overview
NameDC887334
Unique NameDC887334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_CLONN (Chaperone protein dnaJ OS=Clostridium novyi (strain NT) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  286 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVD 495
            KD YEVLG+ + AS  EIKKAY KLA++ HPD+N G++EA+EKF+ + +   +L D +K+A YDQ G  D
Sbjct:    4 KDYYEVLGLSKGASDDEIKKAYRKLAMKYHPDRNQGNKEAEEKFKDINEAYQVLSDPQKKANYDQFGSAD 73          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLTE (Chaperone protein dnaJ OS=Chlorobium tepidum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV R+A + EIKKAY KLAL+ HPDKNP ++EA+EKF+++ +   +L +++KR  YDQ G
Sbjct:    3 RDYYEILGVARSADKDEIKKAYRKLALKYHPDKNPDNKEAEEKFKEVNEAYEVLSNDDKRRRYDQFG 69          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_BDEBA (Chaperone protein dnaJ OS=Bdellovibrio bacteriovorus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGVE+ A Q  IKKAY KLA++ HPDKNPG++EA+EKF++      +L D +KRA YD+ G
Sbjct:    5 RDYYEILGVEKGADQDTIKKAYRKLAMQFHPDKNPGNKEAEEKFKEAAGAYEVLSDAQKRAQYDRFG 71          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNJB8_MOUSE (DnaJ homolog subfamily B member 8 OS=Mus musculus GN=Dnajb8 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = -1
Query:  292 YEVLGVERTASQQEIKKAYYKLALRLHPDKNPGD-EEAKEKFQQLQKVISILGDEEKRALYDQTGC 486
            YEVLGV+ +AS ++IKKAY KLALR HPDKNP + EEA++KF+Q+ +   +L D +KR++YD+ GC
Sbjct:    5 YEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSKKRSVYDRAGC 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_THISH (Chaperone protein dnaJ OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV + AS+ E+KKA+ +LA++ HPD+NPGD+E++EKF++ ++   IL D +KRA YDQ G
Sbjct:    4 RDYYEILGVAKNASEAELKKAFRRLAMKHHPDRNPGDKESEEKFKEAKEAYEILTDPQKRAAYDQFG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_THICR (Chaperone protein dnaJ OS=Thiomicrospira crunogena (strain XCL-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+L V  TAS+ EIKKAY KLA+R HPD+NP DEEA++KF++  +   +L D +KR  YDQ G
Sbjct:    4 RDYYEILEVSATASEGEIKKAYRKLAMRYHPDRNPDDEEAEDKFKEASEAYEVLSDAQKRQAYDQFG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_TERTT (Chaperone protein dnaJ OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YEVLGV R  S+Q++KKAY K+A++ HPD+NP D  A+EKF++  +   +L D++KRA YDQ G
Sbjct:    4 RDYYEVLGVARDVSEQDLKKAYRKVAMKFHPDRNPDDASAEEKFKEASEAYEVLSDKQKRAAYDQFG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIFL (Chaperone protein dnaJ OS=Shigella flexneri GN=dnaJ PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 34/67 (50.75%), Postives = 53/67 (79.10%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EI+KAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIF8 (Chaperone protein dnaJ OS=Shigella flexneri serotype 5b (strain 8401) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 34/67 (50.75%), Postives = 53/67 (79.10%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EI+KAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_RALEJ (Chaperone protein dnaJ OS=Ralstonia eutropha (strain JMP134) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = -1
Query:  268 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVD-DADLAG 495
            +D YEVLGV + AS  EIKKAY KLA++ HPD+NP  +E++EKF+++++   +L D EK+A YDQ G    D ++AG
Sbjct:    4 RDYYEVLGVGKNASDDEIKKAYRKLAMKYHPDRNPDSKESEEKFKEVKEAYEMLSDAEKKAAYDQYGHAGVDPNMAG 80          
The following BLAST results are available for this feature:
BLAST of DC887334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CLONN2.064e-1552.86Chaperone protein dnaJ OS=Clostridium novyi (strai... [more]
DNAJ_CHLTE2.064e-1553.73Chaperone protein dnaJ OS=Chlorobium tepidum GN=dn... [more]
DNAJ_BDEBA2.064e-1555.22Chaperone protein dnaJ OS=Bdellovibrio bacteriovor... [more]
DNJB8_MOUSE2.695e-1557.58DnaJ homolog subfamily B member 8 OS=Mus musculus ... [more]
DNAJ_THISH2.695e-1552.24Chaperone protein dnaJ OS=Thioalkalivibrio sp. (st... [more]
DNAJ_THICR2.695e-1555.22Chaperone protein dnaJ OS=Thiomicrospira crunogena... [more]
DNAJ_TERTT2.695e-1552.24Chaperone protein dnaJ OS=Teredinibacter turnerae ... [more]
DNAJ_SHIFL2.695e-1550.75Chaperone protein dnaJ OS=Shigella flexneri GN=dna... [more]
DNAJ_SHIF82.695e-1550.75Chaperone protein dnaJ OS=Shigella flexneri seroty... [more]
DNAJ_RALEJ2.695e-1550.65Chaperone protein dnaJ OS=Ralstonia eutropha (stra... [more]

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Properties
Property NameValue
Genbank descriptionDC887334 EIC Citrus sinensis cDNA clone EIC0215 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887334 ID=DC887334; Name=DC887334; organism=Citrus sinensis; type=EST; length=726bp
TTGGTAGGTTTTAGTTGCTTTCAGTTCTCCTGCAGCTATTGTCTCGTCAA
GAATATCCTTGAAACGGTGTGAATCAAGTTTCTGGTCCGAACAAAGCATT
GAACAGAAAAGCCTGTTCATATTCCCCTTGTACTTCTTATACAGATCAAT
CAAATCTTTCTTCTCTGAATCAGATCCCCTGTAGTTTGCCTCAAACTCTT
CAATATCAGCCTCAGTGACCTTTTTGTACATGGCTCCAAAAAACTCTTTC
AAATTTTGAACAACATCCCCAGCCAGGTCAGCATCATCGACACAACCGGT
CTGGTCATAAAGAGCCCGTTTTTCTTCATCACCAAGAATTGAAATGACCT
TTTGTAGTTGTTGAAATTTCTCCTTCGCCTCCTCATCACCAGGATTTTTA
TCTGGATGGAGTCGTAAGGCCAATTTATAGTATGCTTTCTTTATTTCCTG
TTGAGATGCTGTCCTTTCAACACCAAGAACCTCATAAAGGTCCTTATCAT
TTGAAGAAGATTGATTCAGATTCTCCTGATTTAGTTCTTCTTCTTCTTCT
TCTTCATGCGAAACCCTAGATTTCTTCTGCTTTCCCATTTTACCCCTTTT
AAATTTCTTTACTTTGCTTTCCAAAGTGAAAGAAGCAAAGGGTTGGGGTT
CTTATACCAGTGGTAGTACTGGTGCTGAATAAAATTTTCGTCTCCGATTT
ATTCCCGCCATTTCGGCTCTTTTCCC
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