DC887334

Overview
NameDC887334
Unique NameDC887334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_DESHY (Chaperone protein dnaJ OS=Desulfitobacterium hafniense (strain Y51) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YEVLGV ++A +QEIKKAY KLA + HPD NPGD++A+EKF++  +   +L D EKRA YDQ G
Sbjct:    3 RDYYEVLGVSKSADEQEIKKAYRKLARQYHPDVNPGDKDAEEKFKEATEAYDVLSDTEKRARYDQMG 69          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_DESHD (Chaperone protein dnaJ OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YEVLGV ++A +QEIKKAY KLA + HPD NPGD++A+EKF++  +   +L D EKRA YDQ G
Sbjct:    3 RDYYEVLGVSKSADEQEIKKAYRKLARQYHPDVNPGDKDAEEKFKEATEAYDVLSDTEKRARYDQMG 69          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_BORBR (Chaperone protein dnaJ OS=Bordetella bronchiseptica GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = -1
Query:  217 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCV----DDADLAGDVVQNLKEFFGAMYKKV 495
            +D YEVLGV + AS +++KKAY KLA++ HPD+NP  +EA+EKF++ ++   +LGDE+KRA YD+ G      + A + G +     + FG ++ ++
Sbjct:    4 RDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAGMGGGMGGGFADAFGDIFGEI 100          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJH_SYNY3 (DnAJ-like protein slr0093 OS=Synechocystis sp. (strain PCC 6803) GN=slr0093 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            KD Y++LGV +TAS+ EIKK + KLAL+ HPDKNPGD+ A+EKF+++ +   +L D EKR  YDQ G
Sbjct:    7 KDYYQILGVTKTASEAEIKKQFRKLALKYHPDKNPGDKAAEEKFKEISEAYEVLSDPEKRQKYDQFG 73          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_PHOLL (Chaperone protein dnaJ OS=Photorhabdus luminescens subsp. laumondii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 37/67 (55.22%), Postives = 55/67 (82.09%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YEVLGV +TAS++EIKKAY +LA++ HPD+N GD+EA+ +F+++++   IL D++KRA YDQ G
Sbjct:    4 RDYYEVLGVSKTASEKEIKKAYKRLAMKYHPDRNQGDKEAESQFKEVKEAYEILTDDQKRAAYDQYG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_PELCD (Chaperone protein dnaJ OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YEVLGV R AS+ EIKKAY KLA++ HPDKN GD+ A++KF+++ +  SIL D ++R +YDQ G
Sbjct:    4 RDYYEVLGVHRNASETEIKKAYRKLAIKYHPDKNAGDKAAEDKFKEISEAYSILSDTQQRVIYDQYG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIG1 (Chaperone protein dnaJ OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = -1
Query:  295 DKDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 498
            ++D Y  LGV R A+  EIKKAY KLA++ HPD+NP ++EA+EKF+++QK    L D+EKRA+YDQ G
Sbjct:    3 NQDFYATLGVARAATDDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVQKAYETLSDKEKRAMYDQYG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBY (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain AYE) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YEVLGV +TAS  EIKKAY KLA++ HPD+NP + EA+EKF++  +   IL D EKR++YD+ G
Sbjct:    4 RDYYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBT (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YEVLGV +TAS  EIKKAY KLA++ HPD+NP + EA+EKF++  +   IL D EKR++YD+ G
Sbjct:    4 RDYYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBS (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain SDF) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YEVLGV +TAS  EIKKAY KLA++ HPD+NP + EA+EKF++  +   IL D EKR++YD+ G
Sbjct:    4 RDYYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMG 70          
The following BLAST results are available for this feature:
BLAST of DC887334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_DESHY2.438e-1658.21Chaperone protein dnaJ OS=Desulfitobacterium hafni... [more]
DNAJ_DESHD2.438e-1658.21Chaperone protein dnaJ OS=Desulfitobacterium hafni... [more]
DNAJ_BORBR2.438e-1641.24Chaperone protein dnaJ OS=Bordetella bronchiseptic... [more]
DNAJH_SYNY32.438e-1656.72DnAJ-like protein slr0093 OS=Synechocystis sp. (st... [more]
DNAJ_PHOLL3.184e-1655.22Chaperone protein dnaJ OS=Photorhabdus luminescens... [more]
DNAJ_PELCD3.184e-1656.72Chaperone protein dnaJ OS=Pelobacter carbinolicus ... [more]
DNAJ_NEIG13.184e-1655.88Chaperone protein dnaJ OS=Neisseria gonorrhoeae (s... [more]
DNAJ_ACIBY3.184e-1656.72Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIBT3.184e-1656.72Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIBS3.184e-1656.72Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]

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Properties
Property NameValue
Genbank descriptionDC887334 EIC Citrus sinensis cDNA clone EIC0215 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887334 ID=DC887334; Name=DC887334; organism=Citrus sinensis; type=EST; length=726bp
TTGGTAGGTTTTAGTTGCTTTCAGTTCTCCTGCAGCTATTGTCTCGTCAA
GAATATCCTTGAAACGGTGTGAATCAAGTTTCTGGTCCGAACAAAGCATT
GAACAGAAAAGCCTGTTCATATTCCCCTTGTACTTCTTATACAGATCAAT
CAAATCTTTCTTCTCTGAATCAGATCCCCTGTAGTTTGCCTCAAACTCTT
CAATATCAGCCTCAGTGACCTTTTTGTACATGGCTCCAAAAAACTCTTTC
AAATTTTGAACAACATCCCCAGCCAGGTCAGCATCATCGACACAACCGGT
CTGGTCATAAAGAGCCCGTTTTTCTTCATCACCAAGAATTGAAATGACCT
TTTGTAGTTGTTGAAATTTCTCCTTCGCCTCCTCATCACCAGGATTTTTA
TCTGGATGGAGTCGTAAGGCCAATTTATAGTATGCTTTCTTTATTTCCTG
TTGAGATGCTGTCCTTTCAACACCAAGAACCTCATAAAGGTCCTTATCAT
TTGAAGAAGATTGATTCAGATTCTCCTGATTTAGTTCTTCTTCTTCTTCT
TCTTCATGCGAAACCCTAGATTTCTTCTGCTTTCCCATTTTACCCCTTTT
AAATTTCTTTACTTTGCTTTCCAAAGTGAAAGAAGCAAAGGGTTGGGGTT
CTTATACCAGTGGTAGTACTGGTGCTGAATAAAATTTTCGTCTCCGATTT
ATTCCCGCCATTTCGGCTCTTTTCCC
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