DC887334

Overview
NameDC887334
Unique NameDC887334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SHEAM (Chaperone protein dnaJ OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 37/67 (55.22%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YEVLGV R AS++EIKKAY +LA++ HPD+NPGD+EA+  F+++++   IL D +K+A YDQ G
Sbjct:    4 RDYYEVLGVGRDASEREIKKAYKRLAMKYHPDRNPGDKEAEASFKEVKEAYEILTDTDKKAAYDQFG 70
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SALTY (Chaperone protein dnaJ OS=Salmonella typhimurium GN=dnaJ PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EIKKAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 RDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYG 70
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SALTI (Chaperone protein dnaJ OS=Salmonella typhi GN=dnaJ PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EIKKAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 RDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYG 70
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SALSV (Chaperone protein dnaJ OS=Salmonella schwarzengrund (strain CVM19633) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EIKKAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 RDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYG 70
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPK (Chaperone protein dnaJ OS=Salmonella paratyphi A (strain AKU_12601) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EIKKAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 RDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYG 70
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPC (Chaperone protein dnaJ OS=Salmonella paratyphi C (strain RKS4594) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EIKKAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 RDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYG 70
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPB (Chaperone protein dnaJ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EIKKAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 RDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYG 70
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SALPA (Chaperone protein dnaJ OS=Salmonella paratyphi A GN=dnaJ PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EIKKAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 RDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYG 70
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SALNS (Chaperone protein dnaJ OS=Salmonella newport (strain SL254) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EIKKAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 RDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYG 70
[Close]
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_SALHS (Chaperone protein dnaJ OS=Salmonella heidelberg (strain SL476) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1 
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            +D YE+LGV +TA ++EIKKAY +LA++ HPD+N GD+EA+ KF+++++   +L D +KRA YDQ G
Sbjct:    4 RDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYG 70
The following BLAST results are available for this feature:
BLAST of DC887334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_SHEAM1.210e-1555.22Chaperone protein dnaJ OS=Shewanella amazonensis (... [more]
DNAJ_SALTY1.210e-1552.24Chaperone protein dnaJ OS=Salmonella typhimurium G... [more]
DNAJ_SALTI1.210e-1552.24Chaperone protein dnaJ OS=Salmonella typhi GN=dnaJ... [more]
DNAJ_SALSV1.210e-1552.24Chaperone protein dnaJ OS=Salmonella schwarzengrun... [more]
DNAJ_SALPK1.210e-1552.24Chaperone protein dnaJ OS=Salmonella paratyphi A (... [more]
DNAJ_SALPC1.210e-1552.24Chaperone protein dnaJ OS=Salmonella paratyphi C (... [more]
DNAJ_SALPB1.210e-1552.24Chaperone protein dnaJ OS=Salmonella paratyphi B (... [more]
DNAJ_SALPA1.210e-1552.24Chaperone protein dnaJ OS=Salmonella paratyphi A G... [more]
DNAJ_SALNS1.210e-1552.24Chaperone protein dnaJ OS=Salmonella newport (stra... [more]
DNAJ_SALHS1.210e-1552.24Chaperone protein dnaJ OS=Salmonella heidelberg (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887334 EIC Citrus sinensis cDNA clone EIC0215 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887334 ID=DC887334; Name=DC887334; organism=Citrus sinensis; type=EST; length=726bp
TTGGTAGGTTTTAGTTGCTTTCAGTTCTCCTGCAGCTATTGTCTCGTCAA
GAATATCCTTGAAACGGTGTGAATCAAGTTTCTGGTCCGAACAAAGCATT
GAACAGAAAAGCCTGTTCATATTCCCCTTGTACTTCTTATACAGATCAAT
CAAATCTTTCTTCTCTGAATCAGATCCCCTGTAGTTTGCCTCAAACTCTT
CAATATCAGCCTCAGTGACCTTTTTGTACATGGCTCCAAAAAACTCTTTC
AAATTTTGAACAACATCCCCAGCCAGGTCAGCATCATCGACACAACCGGT
CTGGTCATAAAGAGCCCGTTTTTCTTCATCACCAAGAATTGAAATGACCT
TTTGTAGTTGTTGAAATTTCTCCTTCGCCTCCTCATCACCAGGATTTTTA
TCTGGATGGAGTCGTAAGGCCAATTTATAGTATGCTTTCTTTATTTCCTG
TTGAGATGCTGTCCTTTCAACACCAAGAACCTCATAAAGGTCCTTATCAT
TTGAAGAAGATTGATTCAGATTCTCCTGATTTAGTTCTTCTTCTTCTTCT
TCTTCATGCGAAACCCTAGATTTCTTCTGCTTTCCCATTTTACCCCTTTT
AAATTTCTTTACTTTGCTTTCCAAAGTGAAAGAAGCAAAGGGTTGGGGTT
CTTATACCAGTGGTAGTACTGGTGCTGAATAAAATTTTCGTCTCCGATTT
ATTCCCGCCATTTCGGCTCTTTTCCC
back to top