EY666407

Overview
NameEY666407
Unique NameEY666407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.099e-18
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  366 PYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTN--KTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTLTK-----WEMGSWGGPVGTY 782
            P  +K+   Y+WI GTG  +  K++T+ +  +   E+P+WN+DGSST QA G +S++ L P  +F+DPF    N LV+C+      +   TN   T   + E+ ++ +     PWFG+EQEYT          W    + GP G Y
Sbjct:   21 PQGEKVQVTYVWIDGTGEGVRCKTRTLDQEPKTIDEIPEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKKIMEMVNDHR-----PWFGMEQEYTLLGINGHPYGWPENGFPGPQGPY 161          

HSP 2 Score: 24.2534 bits (51), Expect = 1.099e-18
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  791 PQGPYYWGNLGLIKTLGRE 847
            PQGPYY G +G  K  GR+
Sbjct:  157 PQGPYYCG-VGADKVYGRD 174          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.345e-17
Identity = 56/140 (40.00%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  387 AEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDT-YTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTLTKWEMGSWGGPVGTYPGSPRAP 803
            AEYIWI GT  +   +SKT  + ++   E   W +DGSST QAPG +S+ +L P     DP RGG+N LV+C+   T    P  T     G+AE +++       P FGIEQEYTF     +   +G P   YP +P+ P
Sbjct:    5 AEYIWIDGTEPEPLMRSKT--RIIKDGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTPPTNTRAAALGVAERYADMS-----PMFGIEQEYTFFK---DGRPYGWPEVGYP-APQGP 133          

HSP 2 Score: 24.2534 bits (51), Expect = 4.345e-17
Identity = 16/35 (45.71%), Postives = 19/35 (54.29%), Query Frame = 2
Query:  791 PQGPYYWGNLGLIKTLGRE----HLQIIL*KGLLL 883
            PQGPYY G +G  K  GR+    H Q  L  GL +
Sbjct:  130 PQGPYYCG-VGGSKMPGRQIVERHTQACLDAGLAI 163          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.971e-16
Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  387 AEYIWIGGTG--IDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTLTKWEMGSWGGPVGTYP 785
            AEYIWI GT     + SK+K I+        LP W +DGSST QA G  S+ +L P     DP RGG++ILV+C+       P  +N T   LAE+    + +A+ P FGIEQEYTF    + +G    P G +P
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASN-TRAALAEV--AERFAAQEPIFGIEQEYTFFQDGYPLGF---PKGGFP 133          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.361e-16
Identity = 59/142 (41.55%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  381 IIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP--*GLAEIFSNSKVSAEVPWFGIEQEYTFTLTKWEMGSWGGPVGTYPGSPRA 800
            I AEYIWI GT      +SKT  K +   S LP+W +DGSST QA G  S+++L P     DP RGG+++LV+C+       P P+N       +AE F+  +     P FGIEQEYTF      +G   G  G YP +P+A
Sbjct:    3 IKAEYIWIDGTQPTAKLRSKT--KILSDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTRALLRPVAERFAGQE-----PIFGIEQEYTFLKGDRPLGFPEG--GGYP-APQA 134          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 7.034e-13
Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 3
Query:  390 EYIWIGGTGIDMPSKSKT-ISKPVEHPS--ELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE-PIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTLTKWEMGSWGGPVGTYPGSPRAP 803
            EYIW+ G       + KT I +    P+  +LP W +DGSST QA G  S+ +L P A+F D  R  N +LV+C+   P G+ P  +NK     A I  ++       WFG EQEY F      +G    P   YP +P+ P
Sbjct:    7 EYIWLDGYTPTPNLRGKTQIKEFASFPTLEQLPLWGFDGSSTQQAEGHSSDCVLKPVAVFPDAAR-TNGVLVMCEVMMPDGKTPHASNKR----ATILDDAGA-----WFGFEQEYFFYKDGRPLGF---PTSGYP-APQGP 134          

HSP 2 Score: 25.409 bits (54), Expect = 7.034e-13
Identity = 14/34 (41.18%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  791 PQGPYYWG----NLG-LIKTLGREHLQIIL*KGL 877
            PQGPYY G    N+G + + +  EHL + L  G+
Sbjct:  131 PQGPYYTGVGFSNVGDVARKIVEEHLDLCLAAGI 164          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.697e-12
Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 3
Query:  390 EYIWIGGTGIDMPSKSKTISKPVE-HPS--ELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTLTKWEMGSWGGPVGTYPGSPRAP 803
            EYIW+  T      + KT  K  +  P+  +LP W +DGSST QA G  S+ +L P  ++ DP R  N  LV+C+   P  E    + T          + +  E  WFG EQEY F      +G    P   YP +P+ P
Sbjct:    7 EYIWLDATRPYQTLRGKTQIKEFDAFPTLEQLPLWGFDGSSTLQAEGRTSDCVLKPVTVYPDPVR-TNGALVMCEVMMPDAETPHASNT--------RATVLDDEGAWFGFEQEYFFYKNGRPLGF---PEQGYP-APQGP 134          

HSP 2 Score: 26.1794 bits (56), Expect = 5.697e-12
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  791 PQGPYYWG----NLG-LIKTLGREHLQIIL*KGL 877
            PQGPYY G    N+G + + +  EHL I L  G+
Sbjct:  131 PQGPYYTGVGYKNVGDVARQIVEEHLDICLAAGI 164          
The following BLAST results are available for this feature:
BLAST of EY666407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA_XENLA1.099e-1834.93Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA2_FRAAL4.345e-1740.00Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_STRVR1.971e-1641.48Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY3.361e-1641.55Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_BRAJA7.034e-1336.62Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHIME5.697e-1234.04Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-E08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666407 ID=EY666407; Name=EY666407; organism=Citrus sinensis; type=EST; length=884bp
GGCGCGCAGTACGGTCGGGATTCCGGGTCGACCCACGCGTCCGACCATTT
GAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCATTT
TGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGCGC
AGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACTCA
AACATTGCAGTCTATGAGAACCAAAAAAATTGTGGATTCTCTCTGTTGAT
GAAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGC
TTGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTC
AATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTG
GATTGGAGGTACTGGGATTGATATGCCTAGCAAGTCAAAGACCATTTCAA
AGCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCA
AGTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCA
AGCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTT
GTGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAAACGCCA
TAGGGGCTGGCTGAAATTTTCAGTAACTCCAAAGTGTCTGCTGAAGTTCC
ATGGTTTGGGATAGAGCAAGAATACACCTTTACTCTCACAAAATGGGAAA
TGGGCTCCTGGGGTGGGCCTGTTGGAACCTATCCCGGGTCCCCCAGGGCC
CCTATTACTGGGGAAACTTGGGGCTGATAAAAACGTTAGGCCGGGAACAT
TTGCAAATAATCCTTTAAAAGGGTTTACTTTTGA
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