CN184396

Overview
NameCN184396
Unique NameCN184396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184396 vs. ExPASy Swiss-Prot
Match: YJGB_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjgB OS=Escherichia coli (strain K12) GN=yjgB PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = -1
Query:  261 LGADSFLNSRDPDHLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVI 635
            +GAD  +NSRDP  L+   G  D II+TV+      P    L   G    VGA   PL +P  +LI G ++VSGS+TG   E ++++ FAA+  +    E+  M  +N A++ +     RYR V+
Sbjct:  211 MGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVL 335          
BLAST of CN184396 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 39/132 (29.55%), Postives = 69/132 (52.27%), Query Frame = -1
Query:  243 HLGADSFLNSRDPDHLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 638
            +LGA+  + S +   +    G+ D I+ T+   H I+P + LLK +  +  VG    P  +  + L      +  S   G  E +EM+ F ++HNI  D+++I  D +N   ++L ++  +YR+VIDI  +L
Sbjct:  290 NLGANESILSTNVWQMNQHKGSFDFILSTIPMAHDIVPYIELLKYKATICTVGELF-PTVINGMDLAQHPCFLQSSLIAGSDEIKEMLAFCSEHNIMPDVQIIKADKINDTRQKLLESKAKYRYVIDIRASL 420          
The following BLAST results are available for this feature:
BLAST of CN184396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
YJGB_ECOLI1.376e-1436.00Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
YL498_MIMIV4.144e-1129.55Probable zinc-type alcohol dehydrogenase-like prot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005G23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184396 ID=CN184396; Name=CN184396; organism=Citrus sinensis; type=EST; length=638bp
CCTTTTTTTGAAGGTCATATGCTAAATATTTTATATGAACAATGTTTTAT
TTCATTAACATTTATAGTTTTTCGGCAATCACGACATAATTAGGGTCGAT
GTAACTGGAAATTAAAAGTAATTTAAGCGCTAAAAGAGTGTAATGATCGA
GGGAGCATTACATATAGCAAAGTGGATCATGGAACAAGGTTGTGAATTGA
AGACATCAATCTGATTCTGATTCTTCAAGGTTTGGTGGCGTACAAGGTGT
TTGCAATATCAATGACAAATCGATACCGAACATCAGCCTTGGCAAGCCTC
TCCATTGCCGTATTGACATAATCCATCGAAATAACCTCAATGTCAGCTGT
TATATTGTGTTTTGCTGCAAAATCAATCATCTCTTGCGTCTCTTTCATTC
CCCCAGTGCTGCTCCCTGACACCGTCTTCCTCCCCATAATTAAGGAAATC
ACAGGTAGCTCGAGTGGCTTGTCCGGAGCACCAACCAGAACAAGCTTGCC
CTGGGACTTTAATAGACCGACCAATGGCAAAATGGGGTGCACAGCGGACA
CCGTGTCAATAATACCATCCAATGTGCCCATAGCACCCTGCAAATGGTCA
GGGTCACGGCTATTCAAAAATGAATCAGCGCCAAGATG
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