CN184383

Overview
NameCN184383
Unique NameCN184383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_STAEQ (Aminomethyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 66/178 (37.08%), Postives = 98/178 (55.06%), Query Frame = 2
Query:  185 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            +LKKT L+  +V +G K+V F GW+MP+Q+  SI E     R N  LFDVSHM  + + GKD   F++ ++  D   L       +   N+ GG IDD V  K+ ++H  L+VNA   +KD   I+ H  +FT    DVS +  D+   LA+QGP +  ++  L   D+S +   EF+
Sbjct:    4 DLKKTPLYQNYVDSGAKIVEFGGWAMPVQFS-SIKEEHNAVRYNVGLFDVSHMGEIEISGKDAEQFIQYILSNDTNLLTNDKAMYSALCNDEGGIIDDLVTYKLNENHYLLIVNAANTNKDYQWIKKHSSNFTV---DVS-NTSDKYGQLAIQGPHSRALINELVDIDVSHMAMFEFK 176          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_BACWK (Aminomethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 67/177 (37.85%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  188 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            L++T L D +   GGK V F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+    AK  +VS     E + LA+QGP A  +LQ +  +DL ++ F +F+
Sbjct:    4 LQRTPLFDVYAKYGGKTVDFGGWELPVQFS-SIKEEHEAVRTGAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVIG-DAKVVNVS----SEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFK 174          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_YERPY (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  191 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 655
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_YERPP (Aminomethyltransferase OS=Yersinia pestis (strain Pestoides F) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  191 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 655
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_YERPN (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  191 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 655
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_YERPG (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  191 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 655
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_YERPE (Aminomethyltransferase OS=Yersinia pestis GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  191 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 655
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_YERPB (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  191 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 655
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_YERPA (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  191 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 655
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_BACCZ (Aminomethyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 63/177 (35.59%), Postives = 99/177 (55.93%), Query Frame = 2
Query:  188 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+      G     ++ +E + LA+QGP A  +LQ +  +DL ++ F +F+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV-----IGDATVVNVSNEVAQLAIQGPKAEGILQKVVSEDLKEIKFFKFK 174          
The following BLAST results are available for this feature:
BLAST of CN184383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 331
Match NameE-valueIdentityDescription
GCST_STAEQ6.910e-2437.08Aminomethyltransferase OS=Staphylococcus epidermid... [more]
GCST_BACWK6.910e-2437.85Aminomethyltransferase OS=Bacillus weihenstephanen... [more]
GCST_YERPY9.025e-2442.31Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPP9.025e-2442.31Aminomethyltransferase OS=Yersinia pestis (strain ... [more]
GCST_YERPN9.025e-2442.31Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPG9.025e-2442.31Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPE9.025e-2442.31Aminomethyltransferase OS=Yersinia pestis GN=gcvT ... [more]
GCST_YERPB9.025e-2442.31Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPA9.025e-2442.31Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_BACCZ9.025e-2435.59Aminomethyltransferase OS=Bacillus cereus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005G14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184383 ID=CN184383; Name=CN184383; organism=Citrus sinensis; type=EST; length=719bp
GAGGCTCTTTCGGGCTCCCAGATTTGCTTGTTTCTGAGATAAAGAAGAAA
ACCCCATCTCTATATTTATATCGAATAAAATGAGAGGAGGGAGTCTGTGG
CAGCTTGGACAATCGATCACCCGTCGTTTGGCTCTGGCTGATAAGAAGAC
TATAGCTCGTAGACACTTTGCCTCAGATGCTGAAAACCTGAAAAAAACTG
CCCTTCATGACTTTCATGTGGCTAATGGTGGAAAGATGGTTCCATTTGCT
GGATGGAGCATGCCTATTCAGTACAAGGACTCAATTATGGAATCTACTTT
GAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCTCCCATATGTGTGGGC
TGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTTGAGAAGCTTGTGATC
GCTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTAC
AAATGAAAATGGGGGTTCAATTGATGATTCGGTTATTACCAAGGTGAAGG
ATGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTT
GCTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGT
CTCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCC
TTGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTA
TACTTCGGGGAGTTCCGAA
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