CN184383

Overview
NameCN184383
Unique NameCN184383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_FRATO (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 58/167 (34.73%), Postives = 93/167 (55.69%), Query Frame = 2 
Query:  194 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLS 694
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A  V++ +   +++
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKAVAVIKRVVTKEIA 163
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_FRATM (Aminomethyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 58/167 (34.73%), Postives = 93/167 (55.69%), Query Frame = 2 
Query:  194 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLS 694
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  D+A L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A  V++ +   +++
Sbjct:    3 KTPLYESHIAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDIAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKAVAVIKRVVTKEIA 163
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_FRATH (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 58/167 (34.73%), Postives = 93/167 (55.69%), Query Frame = 2 
Query:  194 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLS 694
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A  V++ +   +++
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKAVAVIKRVVTKEIA 163
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_FRATF (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 58/167 (34.73%), Postives = 93/167 (55.69%), Query Frame = 2 
Query:  194 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLS 694
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A  V++ +   +++
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKAVAVIKRVVTKEIA 163
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_DESHY (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = 2 
Query:  188 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            LK+T L++ H   G K++ F GW MP+QY   ++E     R    LFDVSHM  + LKGKD + FL+ L+  DV+ +       +      GG +DD ++ +   +H  LVVNA   DKD A ++A  + F     + S     + + LALQGP A  +LQ LT  DL+++ +  F+
Sbjct:    4 LKRTPLYEQHRRAGAKLIDFGGWEMPVQYA-GVIEEHKAVRSKAGLFDVSHMGEVELKGKDSLAFLQYLLTNDVSRIQDNQIQYSPMCTSAGGVVDDLLVYRYSREHFLLVVNAANTDKDFAWMQAQAEGFEISLENRS----GDFAQLALQGPWAEKILQKLTSMDLAQINYYWFK 175
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_DESHD (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = 2 
Query:  188 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            LK+T L++ H   G K++ F GW MP+QY   ++E     R    LFDVSHM  + LKGKD + FL+ L+  DV+ +       +      GG +DD ++ +   +H  LVVNA   DKD A ++A  + F     + S     + + LALQGP A  +LQ LT  DL+++ +  F+
Sbjct:    4 LKRTPLYEQHRRAGAKLIDFGGWEMPVQYA-GVIEEHKAVRSKAGLFDVSHMGEVELKGKDSLAFLQYLLTNDVSRIQDNQIQYSPMCTSAGGVVDDLLVYRYSREHFLLVVNASNTDKDFAWMQAQAEGFEISLENRS----GDFAQLALQGPWAEKILQKLTSMDLAQINYYWFK 175
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_FRATT (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 59/167 (35.33%), Postives = 93/167 (55.69%), Query Frame = 2 
Query:  194 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLS 694
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A  V++ +   +++
Sbjct:    3 KTPLYESHMAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKAVAVIKRVVTKEIA 163
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_FRAT1 (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 59/167 (35.33%), Postives = 93/167 (55.69%), Query Frame = 2 
Query:  194 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLS 694
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A  V++ +   +++
Sbjct:    3 KTPLYESHMAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKAVAVIKRVVTKEIA 163
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_CLOB1 (Aminomethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 66/175 (37.71%), Postives = 94/175 (53.71%), Query Frame = 2 
Query:  182 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYF 706
            ++LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM    + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS    D  + LA QGPLA  +LQ +   DL ++ F
Sbjct:    2 KDLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEAMVTGKDAGKFIQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIVDVS----DSIAQLAFQGPLAEEILQKIVDVDLQEIKF 171
[Close]
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_BACP2 (Aminomethyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 59/171 (34.50%), Postives = 98/171 (57.31%), Query Frame = 2 
Query:  188 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKL 700
            LK+T L   +   G K + F GW +P+Q+  SI E     R    LFDVSHM  + +KG+D +PFL++L+  DV+ L  G    T    E+GG++DD ++ + + +   LV+NA   +KD+  +  H      +   +  ++ DE +LLALQGPLAA +++ +  ++++ L
Sbjct:    2 LKRTPLFHAYETFGAKTIDFGGWELPVQFS-SIKEEHEAVRTKAGLFDVSHMGEVEIKGQDALPFLQRLLTNDVSKLTDGKALYTAMCYEDGGTVDDLLVYQKEKNDYLLVINASNIEKDVEWLLQHQ----GENDVLIQNVSDEIALLALQGPLAADIMKDVADEEVTSL 167
The following BLAST results are available for this feature:
BLAST of CN184383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 331
Match NameE-valueIdentityDescription
GCST_FRATO2.011e-2334.73Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATM2.011e-2334.73Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATH2.011e-2334.73Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATF2.011e-2334.73Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_DESHY2.011e-2336.16Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_DESHD2.011e-2336.16Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_FRATT2.626e-2335.33Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRAT12.626e-2335.33Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_CLOB12.626e-2337.71Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_BACP22.626e-2334.50Aminomethyltransferase OS=Bacillus pumilus (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005G14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184383 ID=CN184383; Name=CN184383; organism=Citrus sinensis; type=EST; length=719bp
GAGGCTCTTTCGGGCTCCCAGATTTGCTTGTTTCTGAGATAAAGAAGAAA
ACCCCATCTCTATATTTATATCGAATAAAATGAGAGGAGGGAGTCTGTGG
CAGCTTGGACAATCGATCACCCGTCGTTTGGCTCTGGCTGATAAGAAGAC
TATAGCTCGTAGACACTTTGCCTCAGATGCTGAAAACCTGAAAAAAACTG
CCCTTCATGACTTTCATGTGGCTAATGGTGGAAAGATGGTTCCATTTGCT
GGATGGAGCATGCCTATTCAGTACAAGGACTCAATTATGGAATCTACTTT
GAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCTCCCATATGTGTGGGC
TGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTTGAGAAGCTTGTGATC
GCTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTAC
AAATGAAAATGGGGGTTCAATTGATGATTCGGTTATTACCAAGGTGAAGG
ATGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTT
GCTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGT
CTCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCC
TTGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTA
TACTTCGGGGAGTTCCGAA
back to top