DC887289

Overview
NameDC887289
Unique NameDC887289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.463e-24
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  199 MAVYKVKLIGPNGEENEF-DAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSV-DQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 489
            MA YKV LI      N   +  DD  I+D+ E+ G++LP SCRAG+CSTCAG++VSG+  +Q D +FLDD Q+  G+V+TCVAYPT DC I TH+ESE+
Sbjct:    1 MATYKVTLINEEEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = -2
Query:  199 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 480
            YKV L  P+G+   FD      +ID A +   +LP SC+AGACSTC G++VSG+VDQS+GSFLDD+Q+E+G+VLTC+A P SD VI THKE EL
Sbjct:    2 YKVTLKTPDGDIT-FDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.030e-22
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = -2
Query:  199 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 480
            YKV L  P+G+   FD      +ID   +   +LP SC+AGACSTC G++VSG+VDQS+GSFLDD+Q+E+G+VLTC+A P SD VI THKE EL
Sbjct:    2 YKVTLKTPDGDIT-FDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.346e-22
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  199 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 489
            MA Y+V+LI    + +   +  ++  I+D AE+ G+ELP+SC +G+CS+C G++V G VDQSD  FLDD+QM KGF L CV YP S+C I TH+E  L
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.757e-22
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  199 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 489
            MA Y+V+LI    + ++  +  +D  I++ A + G+ELP+SC +G+CS+C G++V G VDQSD  FLDD+QM KGF L CV YP S+C I TH+E  L
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.915e-22
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = -2
Query:  199 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 489
            MA Y+V+LI      +   +  ++  I+D AE+ G+ELP+SC +G+CS+C G++V G VDQSD  FLDD+Q+ KGF L CV YP S+C I TH+E  L
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.645e-20
Identity = 43/98 (43.88%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  199 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 489
            MA Y+V+LI      +      +D  ++++AE+  ++LP+SC +GACS+C G++V G ++Q D +FLD++Q+ KGFVL CV YP +DC I TH+E+ L
Sbjct:    1 MATYQVRLINKKRNLDITLPVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.392e-19
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = -2
Query:  199 MAVYKVKLIGPNGE-ENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 489
            M  Y+V+LI      +      ++  I+D+AE   +ELP+SC++G+CS+C  ++V G VDQS+  FLD++QM KGF++ CV+YP SDC I TH+E  L
Sbjct:    1 MTTYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.026e-19
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = -2
Query:  196 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 489
            MA Y+V++I   G+   F A  D  ++DSA+  G++LP SC  G C+TCA +++SG VDQ D   +  +  ++G+ L CVAYP SD  I THKE ELY
Sbjct:    1 MATYQVEVIY-QGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDELY 97          
The following BLAST results are available for this feature:
BLAST of DC887289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA5.463e-2454.55Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_EQUTE3.541e-2358.51Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_EQUAR1.030e-2257.45Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_ANASP1.346e-2250.00Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_FREDI1.757e-2248.98Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERH_ANAVT3.915e-2248.98Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO1.645e-2043.88Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FERV_ANAVT1.392e-1944.90Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_SYNP69.026e-1945.92Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionDC887289 EIC Citrus sinensis cDNA clone EIC0140 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887289 ID=DC887289; Name=DC887289; organism=Citrus sinensis; type=EST; length=631bp
AATGTTTTTGGCTGCATATATCATCATAACGAGAGAATTTCAATCATATA
TTGTAATCATAAAATATGAAAGACTCTCAACACAATATCATGATGCTAAA
GATGAACACAAGCAAATATCAACAGTTTCTTCCACCGTTCTAGCACAAAT
GTGGATCCCAGAAAGCAAACGCCAAGCTCGTAACATTATTATTCAGTAAA
GTTCAGATTCCTTGTGTGTGTAAATTACACAATCCGATGTAGGATATGCA
ACGCATGTAAGCACAAAACCTTTCTCCATCTGCTTATCATCAAGGAATGA
TCCATCTGATTGGTCAACGGAGCCTGAAACCATCTGCCCAGCACAAGTAG
AGCAGGCACCAGCCCGACATGAGTAGGGTAGCTCCATTCCGGTATCTTCG
GCAGAGTCTATGATGTAAGCATCATCGGGGGCATCAAACTCATTCTCCTC
TCCGTTTGGTCCAATCAGTTTCACTTTGTAAACGGCCATTGCAGATGCTT
TGAATGAAGAACACTTCAGTCCAAATGCTTTAGAAACACTCCTGGTCGAA
CCCAGGGAACCCGGGCTCTTGACCAAAGAAAATTTTTTGCTTCGGGGAGC
AGCCTGGAATAAGCAAGATGTGGGAAGTCTC
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