DC887289

Overview
NameDC887289
Unique NameDC887289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.195e-32
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = -2
Query:  196 MAVYKVKLIGPNGEENE-FDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 489
            MA YKV LI      NE  D  DD YI+D+AE+ G++LPYSCRAGACSTCAG++ SGS+DQSD SFLDD Q+E G+VLTCVAYPTSDC I TH+E  LY
Sbjct:    1 MATYKVTLISEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGLY 99          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.195e-32
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKL+ P+G   EFD PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +G+VDQSDG++LDD QM +GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.195e-32
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKL+ P+G   EFD PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +G+VDQSDG++LDD QM +GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.195e-32
Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKL+ P+G   EFD PDD YI+D AE+ G ELPYSCRAG+CS+CAG++ +G+VDQSDG+FLDD QM  GFVLTCVAYP SD  I THKE +L
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.173e-32
Identity = 72/122 (59.02%), Postives = 89/122 (72.95%), Query Frame = -2
Query:  199 SLGSTRSVSKA-FGLKCS-SFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 558
            SL +  +V +A FGLK   + + + MA YKVKLI P G   EF+ PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +GSVDQSDG+FLD+ Q   GFVLTCVAYP  D  I THKE EL
Sbjct:   22 SLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPI-EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.450e-32
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKLI P+G   EFD PDD YI+D AE+ G +LPYSCRAG+CS+CAG++  G+VDQ+DG+FLDD Q+E+G+VLTCVAYP SD  I THKE+EL
Sbjct:    1 ASYKVKLITPDGPI-EFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.118e-32
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKL+ P+G++ EF  PDD YI+D AE+ G++LPYSCRAG+CS+CAG++  G VDQSDGSFLDD+Q+ +G+VLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPSGQQ-EFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.118e-32
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = -2
Query:  196 MAVYKVKLI-GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 489
            MAVYKV+LI    G +   + PDD YI+D+AE+ G++LPYSCRAGACSTCAG++V G+VDQSD SFLDD Q+  G+VLTCVAYP+SDC + TH+E  LY
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESLY 99          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 9.297e-32
Identity = 63/99 (63.64%), Postives = 81/99 (81.82%), Query Frame = -2
Query:  196 MAVYKVKLIGPN-GEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 489
            M  YKVKL     G + E + P+D YI+D+AE+ G++LPYSCRAGACSTCAG+++SG+VDQSD SFLDD+Q+++GFVLTCVAYPTS+C I TH+E  LY
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEALY 99          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.214e-31
Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKL+ P+G   EF+ PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +GSVDQSDG+FLDD Q+  GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of DC887289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SPIMA3.195e-3266.67Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER_DATME3.195e-3266.67Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN3.195e-3266.67Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER2_HYONI3.195e-3267.71Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER1_SOLLC4.173e-3259.02Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER_CAPAA5.450e-3266.67Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER_COLES7.118e-3265.63Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER1_CYAPA7.118e-3263.64Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER1_CYACA9.297e-3263.64Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_SOLAB1.214e-3166.67Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887289 EIC Citrus sinensis cDNA clone EIC0140 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887289 ID=DC887289; Name=DC887289; organism=Citrus sinensis; type=EST; length=631bp
AATGTTTTTGGCTGCATATATCATCATAACGAGAGAATTTCAATCATATA
TTGTAATCATAAAATATGAAAGACTCTCAACACAATATCATGATGCTAAA
GATGAACACAAGCAAATATCAACAGTTTCTTCCACCGTTCTAGCACAAAT
GTGGATCCCAGAAAGCAAACGCCAAGCTCGTAACATTATTATTCAGTAAA
GTTCAGATTCCTTGTGTGTGTAAATTACACAATCCGATGTAGGATATGCA
ACGCATGTAAGCACAAAACCTTTCTCCATCTGCTTATCATCAAGGAATGA
TCCATCTGATTGGTCAACGGAGCCTGAAACCATCTGCCCAGCACAAGTAG
AGCAGGCACCAGCCCGACATGAGTAGGGTAGCTCCATTCCGGTATCTTCG
GCAGAGTCTATGATGTAAGCATCATCGGGGGCATCAAACTCATTCTCCTC
TCCGTTTGGTCCAATCAGTTTCACTTTGTAAACGGCCATTGCAGATGCTT
TGAATGAAGAACACTTCAGTCCAAATGCTTTAGAAACACTCCTGGTCGAA
CCCAGGGAACCCGGGCTCTTGACCAAAGAAAATTTTTTGCTTCGGGGAGC
AGCCTGGAATAAGCAAGATGTGGGAAGTCTC
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