DC887289

Overview
NameDC887289
Unique NameDC887289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.870e-31
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = -2
Query:  196 VYKVKLIGPN-GEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 483
            +YK++L+    G +   + P D YI+D+AE+ G++LPYSCRAGACSTCAG++V GSVDQSD SFLD++Q+  GF+LTCVAYPTSDCVI TH+E  LY
Sbjct:    1 MYKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEALY 97          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.028e-30
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = -2
Query:  196 AVYKVKLIGPN-GEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 486
            A YK+ L+    G +  FD  +D YI+D+AE+ G+ELPYSCRAGACSTCAG++  G+VDQSD SFLDD+QM KG+VLTC+AYP SDC I TH E ELY
Sbjct:    1 ADYKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQELY 98          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.028e-30
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKLI P+G    FD PD+ YI+D+AE+ G +LPYSCRAG+CS+CAG++ +G+VDQSDG+FLDD Q+  GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLITPDGPV-VFDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.342e-30
Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = -2
Query:  196 MAVYKVKLIGPN-GEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 489
            M  +KV LI    G     + PDD YI+D+AE+ G++LPYSCRAGACSTCAG++ +G+VDQSD SFLDD Q++ G+VLTCVAYPTSDC I TH+E +LY
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDLY 99          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.753e-30
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKL+ P G + EF+ PDD YI+D AE+ G+ LPYSCRAG+CS+CAG++ +G V+QSDGSFLDD Q+E+G+VLTCVAY  SD  I THKE EL
Sbjct:    1 ASYKVKLVTPEGTQ-EFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.753e-30
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = -2
Query:  196 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 489
            MA YKV L  P+G+ N    PDD YI+D AE+ G++LPYSCRAGACSTCAG++VSG     D SFLDD Q++ G++LTCVAYPT DCVI THKE  LY
Sbjct:    1 MASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEALY 97          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.753e-30
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKV L+ P+G +   +  DD YI+D+AE+ GM+LPYSCRAGACS+CAG++ SGSVDQSD SFL+D QME+G+VLTC+AYPT D  I THKE EL
Sbjct:    1 ATYKVTLVTPSGSQ-VIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.991e-30
Identity = 65/96 (67.71%), Postives = 75/96 (78.12%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKLI P+G   EF+ PDD YI+D AE+ G +LPYSCRAGACS+CAG++V GSVDQSD SFLDD Q+  GFVLTCVAYP S+  I THKE  L
Sbjct:    1 ASYKVKLITPDGPI-EFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.991e-30
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKV  + P+G +     P D Y++D+AEDTG++LPYSCRAGACS+CAG++ +GSV+Q DGSFLD++QME G+VLTCVAYPTSD  I THKE +L
Sbjct:    2 ASYKVTFVTPSGTKT-ITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.991e-30
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = -2
Query:  199 FGLKCSSFKAS-AMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 525
            FGLK  S      MA YKV L+ P G   EF  PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++ +GS++Q D SFLDD Q+++G+VLTC AYP SD  I THKE EL
Sbjct:   37 FGLKTGSRGGRMTMAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
The following BLAST results are available for this feature:
BLAST of DC887289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_CYACA7.870e-3161.86Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_PORUM1.028e-3063.27Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER_PHYAF1.028e-3065.63Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]
FER1_PLEBO1.342e-3061.62Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER_MEDSA1.753e-3064.58Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_APHSA1.753e-3063.27Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_SPIOL1.753e-3064.58Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER_SOLLS2.991e-3067.71Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER2_PHYES2.991e-3062.50Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_SPIOL2.991e-3058.18Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]

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Properties
Property NameValue
Genbank descriptionDC887289 EIC Citrus sinensis cDNA clone EIC0140 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887289 ID=DC887289; Name=DC887289; organism=Citrus sinensis; type=EST; length=631bp
AATGTTTTTGGCTGCATATATCATCATAACGAGAGAATTTCAATCATATA
TTGTAATCATAAAATATGAAAGACTCTCAACACAATATCATGATGCTAAA
GATGAACACAAGCAAATATCAACAGTTTCTTCCACCGTTCTAGCACAAAT
GTGGATCCCAGAAAGCAAACGCCAAGCTCGTAACATTATTATTCAGTAAA
GTTCAGATTCCTTGTGTGTGTAAATTACACAATCCGATGTAGGATATGCA
ACGCATGTAAGCACAAAACCTTTCTCCATCTGCTTATCATCAAGGAATGA
TCCATCTGATTGGTCAACGGAGCCTGAAACCATCTGCCCAGCACAAGTAG
AGCAGGCACCAGCCCGACATGAGTAGGGTAGCTCCATTCCGGTATCTTCG
GCAGAGTCTATGATGTAAGCATCATCGGGGGCATCAAACTCATTCTCCTC
TCCGTTTGGTCCAATCAGTTTCACTTTGTAAACGGCCATTGCAGATGCTT
TGAATGAAGAACACTTCAGTCCAAATGCTTTAGAAACACTCCTGGTCGAA
CCCAGGGAACCCGGGCTCTTGACCAAAGAAAATTTTTTGCTTCGGGGAGC
AGCCTGGAATAAGCAAGATGTGGGAAGTCTC
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