DC887289

Overview
NameDC887289
Unique NameDC887289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.663e-30
Identity = 60/94 (63.83%), Postives = 76/94 (80.85%), Query Frame = -2
Query:  199 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 480
            YKVKL+ P GE+ EF+ PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++VSG VD SD SFL+D  M+ G+VLTC AY  SD VI THKE E+
Sbjct:    4 YKVKLLTPEGEK-EFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.136e-29
Identity = 59/98 (60.20%), Postives = 76/98 (77.55%), Query Frame = -2
Query:  196 AVYKVKLIGPN-GEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 486
            A YK+ L+  + G +   + PDD YI+D+AE+ G++LPYSCRAGACSTCAG+++ G VDQSD SFLDD Q++ GFVLTCVAYPTS+  I TH+E  LY
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESLY 98          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.136e-29
Identity = 57/96 (59.38%), Postives = 75/96 (78.12%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKV L+ P+G +   D PDD Y++D+AE+ G++LPYSCRAG+CS+CAG++ +G+VDQ D SFLDD Q+E GFVLTCVAYP  D  I THKE ++
Sbjct:    1 ATYKVTLVTPSGTQT-IDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDI 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.484e-29
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = -2
Query:  196 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 486
            A Y VKLI P+GE    +  +D YI+D+AED G++LPYSCRAGACS+C G +  G+VDQSD SFLDD QM KGF LTC  YPTS+C I THKE +L+
Sbjct:    1 ATYSVKLINPDGEVT-IECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDLF 96          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.307e-29
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = -2
Query:  196 MAVYKVKLIGPNGEENE-FDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 489
            MA YKV LI    + N   D  DD +++D+AE+ G++LPYSCRAGACSTCAG++  G++DQS+ +FLDD QM  GFVLTC+AYP SDC I  H+E ELY
Sbjct:    1 MATYKVTLISEEHDINTTIDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDELY 99          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.319e-29
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = -2
Query:  196 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 480
            Y V L  P+GE+    +PD +YI+D+AE+ G++LPYSCRAG+CS+CAG++ SG+VDQSD SFLDD QM+ GFVLTCVAY TSDC I TH+E  LY
Sbjct:    2 YMVTLKTPSGEQKVEVSPD-SYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENLY 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.640e-29
Identity = 57/96 (59.38%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKV  + P+G  N    P D Y++D+AE++G++LPYSCRAGACS+CAG++ +G+V+Q DGSFL+++QME G+VLTCVAYPTSD  I THKE +L
Sbjct:    2 ASYKVTFVTPSGT-NTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.366e-29
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = -2
Query:  196 MAVYKVKLI-GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 489
            MA YK+ L+    G +  F+  +D YI+D+AE+ G+ELPYSCRAGACSTCAG++  G+VDQ+D SFLDD Q+  G+VLTC+AYP+SDC I TH E ELY
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQELY 99          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.366e-29
Identity = 58/95 (61.05%), Postives = 75/95 (78.95%), Query Frame = -2
Query:  196 YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 480
            YKV L  P+G++   +   DAYI+D+AE+ G++LPYSCRAGACS+CAG++ +G++DQSD SFLDD Q  +GFVLTCVAY TSDC I TH+E  LY
Sbjct:    2 YKVTLKTPSGDQT-IEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESLY 95          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.621e-29
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = -2
Query:  196 YKVKLIGPNGEENE-FDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 480
            Y V L+      N     PDD +I+D+AE+ G+ELPYSCRAGACSTCAG+++SG++DQS+ SFLDD QM  GF+LTCVAYPTSDC + TH E +LY
Sbjct:    3 YSVTLVNEEKNINAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDLY 98          
The following BLAST results are available for this feature:
BLAST of DC887289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_PANGI6.663e-3063.83Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER3_CYACA1.136e-2960.20Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_PHYES1.136e-2959.38Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_EUGVI1.484e-2961.86Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_THAWE3.307e-2958.59Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER1_DUNSA4.319e-2963.16Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER2_PHYAM5.640e-2959.38Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER_PORYE7.366e-2959.60Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER2_DUNSA7.366e-2961.05Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER_BUMFI9.621e-2960.42Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887289 EIC Citrus sinensis cDNA clone EIC0140 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887289 ID=DC887289; Name=DC887289; organism=Citrus sinensis; type=EST; length=631bp
AATGTTTTTGGCTGCATATATCATCATAACGAGAGAATTTCAATCATATA
TTGTAATCATAAAATATGAAAGACTCTCAACACAATATCATGATGCTAAA
GATGAACACAAGCAAATATCAACAGTTTCTTCCACCGTTCTAGCACAAAT
GTGGATCCCAGAAAGCAAACGCCAAGCTCGTAACATTATTATTCAGTAAA
GTTCAGATTCCTTGTGTGTGTAAATTACACAATCCGATGTAGGATATGCA
ACGCATGTAAGCACAAAACCTTTCTCCATCTGCTTATCATCAAGGAATGA
TCCATCTGATTGGTCAACGGAGCCTGAAACCATCTGCCCAGCACAAGTAG
AGCAGGCACCAGCCCGACATGAGTAGGGTAGCTCCATTCCGGTATCTTCG
GCAGAGTCTATGATGTAAGCATCATCGGGGGCATCAAACTCATTCTCCTC
TCCGTTTGGTCCAATCAGTTTCACTTTGTAAACGGCCATTGCAGATGCTT
TGAATGAAGAACACTTCAGTCCAAATGCTTTAGAAACACTCCTGGTCGAA
CCCAGGGAACCCGGGCTCTTGACCAAAGAAAATTTTTTGCTTCGGGGAGC
AGCCTGGAATAAGCAAGATGTGGGAAGTCTC
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