EY666394

Overview
NameEY666394
Unique NameEY666394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666394 vs. ExPASy Swiss-Prot
Match: NADB_AQUAE (L-aspartate oxidase OS=Aquifex aeolicus GN=nadB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17
Identity = 62/188 (32.98%), Postives = 93/188 (49.47%), Query Frame = 3
Query:   45 AVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI-SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPNCL 605
            A + P DS   H  DT+ AG YL  +   +++  EG  RI +L   G  FD+ ++G      EGGHS  R++   D TGREI   LL+    +  I +        ++          +GV  +    +  ++FI + + +LA+GGA  +Y  T+NP    GD + +A R  A + N EFVQFHP  L
Sbjct:   61 AAVLPDDSPYLHYCDTLRAGRYLNHELHTKLLTYEGIFRILDLERWGVDFDK-KNGFYETTLEGGHSKPRVLKVKDYTGREIYTKLLKKT-EELGIKILHGELQEIIIEE--------NGVQGVIYSEEGSLKFIRTPLLILATGGAASMYYYTSNPKKVRGDAIGIAFRMGATVKNPEFVQFHPTVL 238          
BLAST of EY666394 vs. ExPASy Swiss-Prot
Match: FRDA_WOLSU (Fumarate reductase flavoprotein subunit OS=Wolinella succinogenes GN=frdA PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.780e-16
Identity = 60/203 (29.56%), Postives = 92/203 (45.32%), Query Frame = 3
Query:   63 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN---------------------LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMA-HRAQAVISNMEFVQFHPNCL 605
            D+ + H  DT+    + CD +  R+     P  IREL A G  + R   G+                     +H    GG    R  + AD TG  +  A+    +    +S+ +   AI L+      D  C+G    ++ T +++ +++K TL+A+GG G IY +TTN +V  G G A+A     A + NME VQFHP  L
Sbjct:   64 DNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLK-LGVSIQDRKEAIALIHQ----DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHPTPL 261          
BLAST of EY666394 vs. ExPASy Swiss-Prot
Match: FRDA_HELPY (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori GN=frdA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 58/198 (29.29%), Postives = 87/198 (43.94%), Query Frame = 3
Query:   63 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH-------SHHRIVHAADMTGREIERALLEAVVSDPN----ISVFEHHFAIDLLTTLD-----GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMA-HRAQAVISNMEFVQFHPNCL 605
            D+ + H  DT+    + CD +  R+  T  P  IREL + G  + R + G+      G H         H  + + D  G +  R    A  +       ++    H  +D+    D       D  C+G    ++ T E+  ++SK TLLA+GG G +Y  TTN ++  G G A A     A + NME VQFHP  L
Sbjct:   64 DNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHVTITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAFIHHDNKCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGAASALETGVAKLGNMEAVQFHPTAL 261          
BLAST of EY666394 vs. ExPASy Swiss-Prot
Match: FRDA_HELPJ (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori J99 GN=frdA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 58/198 (29.29%), Postives = 87/198 (43.94%), Query Frame = 3
Query:   63 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH-------SHHRIVHAADMTGREIERALLEAVVSDPN----ISVFEHHFAIDLLTTLD-----GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMA-HRAQAVISNMEFVQFHPNCL 605
            D+ + H  DT+    + CD +  R+  T  P  IREL + G  + R + G+      G H         H  + + D  G +  R    A  +       ++    H  +D+    D       D  C+G    ++ T E+  ++SK TLLA+GG G +Y  TTN ++  G G A A     A + NME VQFHP  L
Sbjct:   64 DNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHVIITERDDRHGYILSRDFGGTKKWRTCFTADATGHTMLYAVANEALHHKVDIQDRKDMLAFIHHDNKCYGAVVRDLITGEISAYVSKGTLLATGGYGRVYKHTTNAVICDGAGAASALETGVAKLGNMEAVQFHPTAL 261          
The following BLAST results are available for this feature:
BLAST of EY666394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
NADB_AQUAE3.971e-1732.98L-aspartate oxidase OS=Aquifex aeolicus GN=nadB PE... [more]
FRDA_WOLSU9.780e-1629.56Fumarate reductase flavoprotein subunit OS=Wolinel... [more]
FRDA_HELPY1.844e-1429.29Fumarate reductase flavoprotein subunit OS=Helicob... [more]
FRDA_HELPJ1.844e-1429.29Fumarate reductase flavoprotein subunit OS=Helicob... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666394 ID=EY666394; Name=EY666394; organism=Citrus sinensis; type=EST; length=886bp
GGCACGCAGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGGTGCTGTG
CTTTGCCCTTCAGATTCTGTTGAGAGTCACATGCAGGACACAATTGTCGC
AGGGGCTTATCTATGTGATGACGAAACTGTTAGAGTTGTTTGTACAGAAG
GACCTGACAGAATAAGAGAATTGATCGCCATAGGTGCATCATTTGATCGT
GGAGAGGATGGAAACTTGCACCTAGCTAGAGAAGGGGGACACTCCCATCA
CAGAATCGTCCATGCTGCAGATATGACTGGAAGGGAGATCGAGCGGGCTC
TTTTGGAAGCTGTTGTCAGTGACCCTAATATCTCAGTGTTCGAGCATCAC
TTTGCGATAGATTTGCTAACTACTCTGGATGGTCCTGATGCAGTTTGTCA
CGGTGTTGACACTTTAAATGTTGAAACACAAGAGGTGGTACGATTCATTT
CAAAGGTGACCTTACTTGCATCAGGTGGAGCTGGGCATATTTATCCATCG
ACAACAAATCCTCTGGTGGCCACTGGAGATGGGATGGCTATGGCCCACCG
AGCTCAAGCAGTGATTTCAAACATGGAATTTGTGCAGTTCCACCCCAACT
GCCTTAACTGATGAGGGCCTTCCCTTCAAACCAAAGAAAACTCCAGAGAA
TTTCTTTTCTCATTCAACTGAAGCTGGCAGGGGTGATGGAGGCCTCCTTT
TACAATTAAGGCATGGGAACGGTTCATGCCCCTGGCTGCAGAACAAAACC
TGAACTTGCCCCCTAGGATGCGGGGGCCCAAAACACATAACCGCCCCCCC
TACAAGGGCGCCACCGACCAGGGATGGAGTCCCTTAGTATAAGTCAAGCG
GCCTGACGAAAGAAAGCACCCGCCGCCCTTTTGCCA
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