CN184315

Overview
NameCN184315
Unique NameCN184315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.628e-47
Identity = 81/130 (62.31%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    4 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            +  +PAGRIV  L+    P+T ENFRALCTGEKG+G SGKPLHYK S FHR+IP FM Q            ESIYG KF DENF  KH+ PG+LSMANAGP TNGSQFF+ T  T WLDG+H VFG+V+E
Sbjct:   38 IDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIE 167          

HSP 2 Score: 33.4982 bits (75), Expect = 4.628e-47
Identity = 14/31 (45.16%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  392 KGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 484
            +GMD+VK +E +GS SG  +K   I++ G+L
Sbjct:  167 EGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 5.180e-47
Identity = 94/147 (63.95%), Postives = 103/147 (70.07%), Query Frame = 1
Query:    1 TVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV---------VERDGRRQG 414
            T  G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGSSFHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V         +ER G R G
Sbjct:   11 TADGEPLGRVCFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNG 150          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 7.890e-47
Identity = 86/132 (65.15%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    1 TVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVER 396
            TV G+P GRI ++ FAD  P+TAENFRAL TGEKG         YKGS FHR+IPGFMCQ            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+CTAKTEWLDGKHV FG+V ER
Sbjct:   11 TVDGKPLGRISIKQFADKIPKTAENFRALSTGEKG-------FRYKGSCFHRIIPGFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKER 135          

HSP 2 Score: 31.9574 bits (71), Expect = 7.890e-47
Identity = 12/28 (42.86%), Postives = 21/28 (75.00%), Query Frame = 2
Query:  398 MDVVKAIEKVGSSSGRTNKPVVIADCGQ 481
            +++V+A+E  G  + +T+K + IADCGQ
Sbjct:  136 VNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 7.894e-47
Identity = 83/129 (64.34%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    1 TVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 387
            ++GG+PAGRIV  LF DV P+T ENFRALCTGEKG G       YKGS FHR+IPGFMCQ            +SIYGSKF DENF  KH+ P +LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V
Sbjct:   10 SIGGKPAGRIVFALFDDV-PKTVENFRALCTGEKGFG-------YKGSKFHRIIPGFMCQGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEV 130          

HSP 2 Score: 43.5134 bits (101), Expect = 7.894e-47
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 2
Query:  395 GMDVVKAIEKVGSSSGRTNKPVVIADCGQL 484
            G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:  133 GEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.016e-46
Identity = 81/130 (62.31%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    4 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            +GGQ AGR+   L++D+ P+TAENFRALCTGEKG+G+SGKPL YKGS+FHRVI GFMCQ            ESIYG KF DE F   H+ P +LSMANAGP TNGSQFF+  + T  LDGKHVVFG+V++
Sbjct:   13 IGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLGQSGKPLWYKGSAFHRVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIK 142          

HSP 2 Score: 35.039 bits (79), Expect = 1.016e-46
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  392 KGMDVVKAIEKVGSSSGRTNK-PVVIADCGQLS 487
            KG  VV+ IE   +++G   K PVVIADCGQLS
Sbjct:  142 KGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.324e-46
Identity = 86/131 (65.65%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    1 TVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            T+G +P GRIV ELF D+ P+TAENFRALCTGEKG GKSGKPL Y+GS FHR+I  FM Q            ESIYG KF DENFV KH  P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V++
Sbjct:   11 TIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLK 141          

HSP 2 Score: 29.261 bits (64), Expect = 1.324e-46
Identity = 14/32 (43.75%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  392 KGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 487
            KG  VV+A+E + + S R  +  VIA CG+L+
Sbjct:  141 KGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 2.571e-46
Identity = 93/144 (64.58%), Postives = 101/144 (70.14%), Query Frame = 1
Query:   10 GQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV---------VERDGRRQG 414
            G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGSSFHR+IPGFMCQ             SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V         +ER G R G
Sbjct:   14 GEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.571e-46
Identity = 92/152 (60.53%), Postives = 104/152 (68.42%), Query Frame = 1
Query:    4 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV---------VERDGRRQGHRESGV 432
            + G+ AGRIVM LF    P+T ENFRALCTGEKG+GK+GK LHYKGSSFHR+IP FM Q            ESIYG KFADENF  KHTGPG LSMANAG  TNGSQFF+ T  T WLDG+HVVFG+V         VE +G + G  +S V
Sbjct:   43 IDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKV 194          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 184.111 bits (466), Expect = 3.358e-46
Identity = 93/146 (63.70%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    4 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV---------VERDGRRQG 414
            V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V         +ER G R G
Sbjct:   12 VDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPIA_PAPAN (Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 3.358e-46
Identity = 93/146 (63.70%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    4 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV---------VERDGRRQG 414
            V G+P GR+  ELFAD  P+TAENFRAL TGEKG G       YKGS FHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V         +ER G R G
Sbjct:   12 VDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150          
The following BLAST results are available for this feature:
BLAST of CN184315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPIB_DICDI4.628e-4762.31Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIA_RAT5.180e-4763.95Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PAL4A_HUMAN7.890e-4765.15Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIA_ECHGR7.894e-4764.34Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPID_AMAMU1.016e-4662.31Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPID_RHIOR1.324e-4665.65Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIA_CRIGR2.571e-4664.58Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
CP20A_ARATH2.571e-4660.53Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIA_PONPY3.358e-4663.70Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]
PPIA_PAPAN3.358e-4663.70Peptidyl-prolyl cis-trans isomerase A OS=Papio anu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005F01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184315 ID=CN184315; Name=CN184315; organism=Citrus sinensis; type=EST; length=521bp
ACCGTCGGCGGTCAGCCGGCCGGCAGGATCGTGATGGAGCTCTTCGCCGA
TGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGA
AAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACTACAAAGGCTCGTCCTTC
CACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGACTTCACCGCCGG
AAACGGAACCGGAGGCGAATCAATCTACGGCTCGAAATTCGCCGATGAGA
ACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCC
GGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGA
GTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAGGTCGTCGAAAGGGATG
GACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGCAGGACCAA
CAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCAT
GATAATGATCGCCATCATCAC
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