CN184315

Overview
NameCN184315
Unique NameCN184315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.687e-43
Identity = 83/131 (63.36%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    4 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            +GG+  GRIV+ELFAD+ P+TAENFRALCTGEKG G + GKPLH+KG  FHR+I  FM Q            ESIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++
Sbjct:   24 IGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIK 154          

HSP 2 Score: 26.9498 bits (58), Expect = 1.687e-43
Identity = 12/31 (38.71%), Postives = 19/31 (61.29%), Query Frame = 2
Query:  392 KGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 484
            KG+ V + +E V  +  +  K  VIA+CG+L
Sbjct:  154 KGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.888e-43
Identity = 78/128 (60.94%), Postives = 89/128 (69.53%), Query Frame = 1
Query:   10 GQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            G+ AGRIV+ L+ D  P+T ENFRALCTGEKG G       YKGS+FHRVI  FM Q            +S+YG  F DENF   H GPG+LSMANAGP TNGSQFF+CT KT WLDG+HVVFGQV+E
Sbjct:  103 GKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFG-------YKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIE 223          

HSP 2 Score: 35.4242 bits (80), Expect = 4.888e-43
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  392 KGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 484
            +GM+VVK IE+  +  G R  K VVIADCGQL
Sbjct:  223 EGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.351e-43
Identity = 79/130 (60.77%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    4 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            V G   GRI  EL+ +V P+TAENFRALCTGEKG G       YKG  FHR+IP FM Q            +SIYGSKFADENFVKKH   G+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +
Sbjct:   30 VNGTKIGRIEFELYDNVVPKTAENFRALCTGEKGWG-------YKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTK 152          

HSP 2 Score: 38.5058 bits (88), Expect = 8.351e-43
Identity = 16/32 (50.00%), Postives = 24/32 (75.00%), Query Frame = 2
Query:  389 SKGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 484
            +KGMD+VKAIE  G++SG+    +VI + G+L
Sbjct:  151 TKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.011e-42
Identity = 85/130 (65.38%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    4 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            +GG+ AGRIVM LF +V P+T ENFRALCTGEK  G       YKGSSFHR+I  FM Q             SIYG+KF DENF  KHTGPGILSMANAGP TNGSQFF+CT KT WLD KHVVFGQV+E
Sbjct:  103 IGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG-------YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIE 225          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 1.077e-42
Identity = 83/134 (61.94%), Postives = 96/134 (71.64%), Query Frame = 1
Query:    4 VGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVERDG 402
            +GG+  GRIV+ELFAD+ P+TAENFRALCTGEKG+G + GKPLH+KG  FHR+I  FM Q            ESIYG KF DENF  KH   G+LSMANAG  TNGSQFF+ T  T  LDGKHVVFGQV++  G
Sbjct:   24 IGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIG 157          

HSP 2 Score: 26.1794 bits (56), Expect = 1.077e-42
Identity = 12/31 (38.71%), Postives = 18/31 (58.06%), Query Frame = 2
Query:  392 KGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 484
            KG+ V + +E V     +  K  VIA+CG+L
Sbjct:  154 KGIGVARILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.091e-42
Identity = 78/131 (59.54%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    1 TVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            ++ G+PAGRI  +LF DV P+TA+NFRALCTGE+G G       YKGS FHRVIP FM Q            +SIYG KFADENF  KH+ PG+LSMANAGP TNGSQFF+ T    WLDG HVVFG+V +
Sbjct:    8 SIDGKPAGRIEFQLFEDVVPKTAKNFRALCTGEQGFG-------YKGSKFHRVIPQFMLQGGDFTRGDGTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTK 131          

HSP 2 Score: 35.039 bits (79), Expect = 1.091e-42
Identity = 16/32 (50.00%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  389 SKGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 484
            +K M++V  IE +GS+SG     VVI DCG L
Sbjct:  130 TKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.402e-42
Identity = 85/133 (63.91%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    4 VGGQPAGRIVMEL----FADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV 390
            +G Q AGRI +EL    F DV P+TAENFRALCTGEKGVGK  KPL YKGS FHRVI  FM Q            ESIYG KF DENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+
Sbjct:   16 IGSQKAGRIALELVRLPFNDVVPKTAENFRALCTGEKGVGKQRKPLSYKGSIFHRVIKQFMIQGGDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVI 148          

HSP 2 Score: 27.7202 bits (60), Expect = 1.402e-42
Identity = 11/31 (35.48%), Postives = 18/31 (58.06%), Query Frame = 2
Query:  395 GMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 487
            G  +V+ IE + + + +    V I DCG+LS
Sbjct:  150 GKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.420e-42
Identity = 83/129 (64.34%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    7 GGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            G  P GR+V EL+ D+ P+TAENFRALCTGEKG+GKSGKPLHYKGSSFHRVI  FM Q            ESIYG  F DENF+ KH   G LSMANAG  TNGSQFF+ TA+T  L+G H VFG+VVE
Sbjct:   16 GNTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVE 143          

HSP 2 Score: 27.7202 bits (60), Expect = 1.420e-42
Identity = 14/32 (43.75%), Postives = 18/32 (56.25%), Query Frame = 2
Query:  392 KGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 484
            +G D+VK +E   +  S R     VI DCGQL
Sbjct:  143 EGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.853e-42
Identity = 78/128 (60.94%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   10 GQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVE 393
            GQP GR+V +L+ D+ P+TAENFRALCTGEKG G       Y GS FHRVIP FM Q            +SIYG KF DENF K H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+VV+
Sbjct:   12 GQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVD 132          

HSP 2 Score: 33.4982 bits (75), Expect = 1.853e-42
Identity = 14/30 (46.67%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  395 GMDVVKAIEKVGSSSGRTNKPVVIADCGQL 484
            G D+VK +E +GS SG T   +V+A  G+L
Sbjct:  133 GYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
BLAST of CN184315 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.108e-40
Identity = 82/135 (60.74%), Postives = 97/135 (71.85%), Query Frame = 1
Query:    1 TVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVG-KSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVERDG 402
            ++GG+  GRIV+EL+ DV P+TAENFR LCTGEKG+G  +G PLHYKG+ FHRVI GFM Q            ESIYG KF DENF  KH   G+LSMAN+GP TNGSQFF+ T +T  LDGKHVVFG+V +  G
Sbjct:   11 SIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMG 145          
The following BLAST results are available for this feature:
BLAST of CN184315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPID_RAT1.687e-4363.3640 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
CP20B_ARATH4.888e-4360.94Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
CYPC_YEAST8.351e-4360.77Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
CP20C_ARATH1.011e-4265.38Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPID_HUMAN1.077e-4261.9440 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPIA2_RHIOR1.091e-4259.54Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
PPID_ASPFU1.402e-4263.91Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPID_DICDI1.420e-4264.34Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
CYPH_YEAST1.853e-4260.94Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
CYP40_ARATH2.108e-4060.74Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005F01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184315 ID=CN184315; Name=CN184315; organism=Citrus sinensis; type=EST; length=521bp
ACCGTCGGCGGTCAGCCGGCCGGCAGGATCGTGATGGAGCTCTTCGCCGA
TGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGA
AAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACTACAAAGGCTCGTCCTTC
CACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGACTTCACCGCCGG
AAACGGAACCGGAGGCGAATCAATCTACGGCTCGAAATTCGCCGATGAGA
ACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCC
GGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGA
GTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAGGTCGTCGAAAGGGATG
GACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGCAGGACCAA
CAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCAT
GATAATGATCGCCATCATCAC
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