DC887272

Overview
NameDC887272
Unique NameDC887272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8509 contig Csv1_Contig8509:480..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: FCSA_DICDI (Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 54/152 (35.53%), Postives = 89/152 (58.55%), Query Frame = -3
Query:  228 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHE--AVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLYSEAKGSKP 677
            DRKK  +    +   +  E +E+++++ P  + ++VYG+S  SFLV VVVPD + ++    +   E    +  +L ++ +  K +L   ++ A + KL GFE LK +++E  PF  E +L+TP+FK KRPQL + Y+  ID LY+E K   P
Sbjct:  515 DRKKNIF-KLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTPSFKPKRPQLKERYQTIIDTLYAEYKRDHP 665          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = -3
Query:  252 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLY 677
            DRKK  +    +   +  E IEN+Y +      ++V+G S  SFL+ VVVPD  +L  +A   +     F+ LC+N   ++ +L++L    ++  L+ FE +K++ + P PF IE  L+TPT K KR +L K+++ +I  LY
Sbjct:  539 DRKKNIF-KLAQGEYIAPEKIENVYSRSRPVLQVFVHGESLRSFLIGVVVPDPDSLPSFAAK-IGVKGSFEELCKNQCVKEAILEDLQKIGKEGGLKSFEQVKSIFVHPEPFTIENGLLTPTLKAKRVELAKFFQTQIKSLY 678          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: LCF2_YEAST (Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyces cerevisiae GN=FAA2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.607e-16
Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = -3
Query:  246 ESIENIYLQ-CPLTTLIWVYGNSFESFLVAVVVPDRKALED-WAVNHLH-----EAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLYSE 623
            E IENIYL  CP  T I+V+G+  ++FLV +V  D  A +   A  H       + V  ++L  N K RK  L+++N       L+GFE L  + +   P  +E D++TPTFK+KR +  K++KD +DQLY+E
Sbjct:  605 EKIENIYLSSCPYITQIFVFGDPLKTFLVGIVGVDVDAAQPILAAKHPEVKTWTKEVLVENLNRNKKLRKEFLNKINKCTDG--LQGFEKLHNIKVGLEPLTLEDDVVTPTFKIKRAKASKFFKDTLDQLYAE 735          

HSP 2 Score: 20.4014 bits (41), Expect = 2.607e-16
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  628 FKLSQGEYVA 657
            FKL+ GEY+A
Sbjct:  594 FKLAHGEYIA 603          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL4_RAT (Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = -3
Query:  252 DRKK-------GXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLY 677
            DRKK       G Y+S  K        +E     CPL   I  +  S +S++++ VVP++K L   A     E   +  +C NP     +L E+   A   KL  FE+   V L P P+  E  L+T  FKLKR +L  +Y   I+++Y
Sbjct:  528 DRKKDLVKLQAGEYVSLGK--------VEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEG-SWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL4_HUMAN (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = -3
Query:  252 DRKK-------GXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLY 677
            DRKK       G Y+S  K        +E     CPL   I  +  S +S++++ VVP++K L   A     E   +  +C NP     +L E+   A   KL  FE+   V L P P+  E  L+T  FKLKR +L  +Y   I+++Y
Sbjct:  569 DRKKDLVKLQAGEYVSLGK--------VEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKRLTLLAQQKGVEGT-WVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL4_MOUSE (Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = -3
Query:  252 KENMLRXESIENIYL--------QCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLY 644
            K+++++ ++ E ++L         CPL   I  +  S +S++++ VVP++K L   A     E   +  +C NP     +L E+   A   KL  FE+   V L P P+  E  L+T  FKLKR +L  +Y   ++++Y
Sbjct:  571 KKDLVKLQAGEYVFLGKVEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEG-SWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDVERMY 708          
The following BLAST results are available for this feature:
BLAST of DC887272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
FCSA_DICDI9.291e-2035.53Fatty acyl-CoA synthetase A OS=Dictyostelium disco... [more]
ACSL5_MOUSE6.022e-1934.51Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]
LCF2_YEAST2.607e-1639.10Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyc... [more]
ACSL4_RAT2.075e-1132.21Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norv... [more]
ACSL4_HUMAN2.075e-1132.21Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
ACSL4_MOUSE2.709e-1129.50Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionDC887272 EIC Citrus sinensis cDNA clone EIC0118 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887272 ID=DC887272; Name=DC887272; organism=Citrus sinensis; type=EST; length=679bp
AGAGGGAGTAACATGATTCCCTGAATCAGAAATAACATGATTCCTTGAAT
CAGAAATCTTCAAACAATCTTATTCATGTACAAACAAGAACAATGATCAA
CATTGCAGTTTTTCTTTACCATGGTTCTCTTGTAAAGGTTGAACATGAGT
CGGAAGGAATTTTCTAGAAGCATCTGCAGATCTGTATATCCGAATATTGG
TTTTTCTATCTTCGGAAATTGCTCTCACGGCTTTGATCCCTTTGCTTCAC
TGTACAATTGATCAATCTTGTCCTTGTAGTATTTAAGCAGCTGTGGCCTC
TTCAGTTTAAATGTCGGAGTAATCAGATCCTTCTCAATGTCGAAGGGAGT
TGGTTCGAGATGAACGGCTTTTAACATCTCAAAACCTCTAAGTTTGTGTT
TCTGGGCAGTGCTGTTGAGCTCATCTAGAACGTATTTCCTTGCCTTAGGG
TTCTCACACAATGATTTAAAATCAACAGCCTCATGAAGATGGTTTACCGC
CCAATCCTCAAGTGCCTTCCTATCAGGGACCACAACAGCTACAAGAAATG
ATTCGAAACTGTTCCCATAGACCCATATCAATGTTGTCAAGGGGCATTGT
AAGTATATGTTCTCAATGCTCTCAANCCGCAACATATTCTCCTTGAGAAA
GCTTAAATANANTCCTTTTTTTCTGTCAA
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