CX676588

Overview
NameCX676588
Unique NameCX676588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_BRUSU (GTP-binding protein era homolog OS=Brucella suis GN=era PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 36/106 (33.96%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW      +S+  M+ ++ E+ RE+L   +H+E+PY+       W++ +DGS+RIEQ +   + SQ+KI++G  G  +  IG  A +E+  I ++ VHL L V+++
Sbjct:  187 PWYYPEDQISDIPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIVLGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVR 292          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RHILO (GTP-binding protein era homolog OS=Rhizobium loti GN=era PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW      +S+  M+ ++ E+ RE+L   +HQE+PYS       W++  DGS+RI+Q +   + SQ+KI++G  G  I  IG  A  E+  I ++ VHL L V+++
Sbjct:  186 PWYYPEDQISDLPMRQLAAEITREKLYLRLHQELPYSSHIETEKWEEKPDGSVRIDQTIYVERDSQKKIVLGHKGETIRAIGQAARMEIAGILEQKVHLFLFVKVR 291          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RICCN (GTP-binding protein era homolog OS=Rickettsia conorii GN=era PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  209 LLNHHPDS--------------GYLMAFYA*AVQRPW--SEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            L  +HPDS              G L    + A   PW  +ED +T  +  M+ I+ E+ RE+L  ++ +E+PY +  +   W+DL+D S++I Q ++ ++ S + I++GKNGSKI  IG ++  ++   F   VHL L V+++
Sbjct:  184 LTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDIT--DLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVR 324          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERAL_HUMAN (GTP-binding protein era homolog OS=Homo sapiens GN=ERAL1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 586
            PW      ++ +  + I   ++RE+LL+H+ QE+PY+++ +   W++   G L I+Q L+  K S  K+L+G  G  I +I  EA  +L  IF  DV + L V+L
Sbjct:  331 PWEYHSAVLTSQTPEEICANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLMDIFLCDVDIRLSVKL 435          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RICCK (GTP-binding protein era homolog OS=Rickettsia canadensis (strain McKiel) GN=era PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 37/108 (34.26%), Postives = 68/108 (62.96%), Query Frame = 2
Query:  272 PW--SEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW  +ED +T  +  M+ I+ E+ RE+L  ++ QE+PY +  +   W++L+D S++I Q ++  + S + I++GKNGSKI  IG ++  ++   F   +HL L V+++
Sbjct:  175 PWLYAEDDIT--DLPMRFIAAEITREQLFLNLQQELPYKLTVQTEKWEELKDKSVKINQVIVVARESYKTIILGKNGSKIKEIGAKSRMQMEQFFSCPIHLFLFVKVR 280          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RICB8 (GTP-binding protein era homolog OS=Rickettsia bellii (strain OSU 85-389) GN=era PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 34/106 (32.08%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW  +   +++  M+ I+ E+ RE+L   + QE+PY +  +   W++L+D S++I Q ++ ++ S + I++GKNGSKI  +G ++  +++  F   VHL L V+++
Sbjct:  175 PWLYEEDDITDLPMRFIAAEITREQLFLGLQQELPYKLTVQTEKWEELKDKSVKINQIIVVSRESYKTIILGKNGSKIKELGAKSRMQMQQFFGFPVHLFLFVKVR 280          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_BRUME (GTP-binding protein era homolog OS=Brucella melitensis GN=era PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 35/106 (33.02%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW      +S+  M+ ++ E+ RE+L   +H+E+PY+       W++ +DGS+RIEQ +   + SQ+KI++G  G  +  IG  A +E+  I ++ VH  L V+++
Sbjct:  187 PWYYPEDQISDMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIVLGHKGETVKAIGQAARKEISEILEQTVHQFLFVKVR 292          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RICFE (GTP-binding protein era homolog OS=Rickettsia felis GN=era PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  209 LLNHHPDS--------------GYLMAFYA*AVQRPW--SEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            L  +HPDS              G L      A   PW  +ED +T  +  M+ I+ E+ RE+L  ++ QE+PY +  +   W+ L+D S++I Q ++ ++ S + I++GKNGSKI  IG ++  ++   F   VHL L V+++
Sbjct:  138 LTENHPDSLLFPISALSGKNIDGLLEYITGKAKISPWLYAEDDIT--DLPMRFIAAEITREQLFFNLQQELPYKLTVQTEKWEVLKDKSIKINQVIVVSRESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVR 278          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RICBR (GTP-binding protein era homolog OS=Rickettsia bellii (strain RML369-C) GN=era PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 34/106 (32.08%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW  +   +++  M+ I+ E+ RE+L   + QE+PY +  +   W++L+D S++I Q ++ ++ S + I++GKNGSKI  +G ++  +++  F   VHL L V+++
Sbjct:  175 PWLYEEDDITDLPMRFIAAEITREQLFLGLQQELPYKLTVQTEKWEELKDKSVKINQIIVVSRESYKTIILGKNGSKIKELGAKSRMQMQQFFGFPVHLFLFVKVQ 280          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_MARMM (GTP-binding protein era homolog OS=Maricaulis maris (strain MCS10) GN=era PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12
Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  320 ISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 586
            ++ E+ RE++   +H+E+PY+       WK LRDGSLRIEQ +I  + +Q+ I++GK GS +  IG  + +EL  +    VHL L V++
Sbjct:  206 LAAEITREKVYLRLHEELPYASMVETEVWKKLRDGSLRIEQSIIVERETQKPIVLGKGGSAVKSIGEASRKELEEVLGCKVHLFLNVKV 294          
The following BLAST results are available for this feature:
BLAST of CX676588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ERA_BRUSU2.484e-1333.96GTP-binding protein era homolog OS=Brucella suis G... [more]
ERA_RHILO3.244e-1335.85GTP-binding protein era homolog OS=Rhizobium loti ... [more]
ERA_RICCN4.237e-1332.17GTP-binding protein era homolog OS=Rickettsia cono... [more]
ERAL_HUMAN4.237e-1334.29GTP-binding protein era homolog OS=Homo sapiens GN... [more]
ERA_RICCK9.438e-1334.26GTP-binding protein era homolog OS=Rickettsia cana... [more]
ERA_RICB89.438e-1332.08GTP-binding protein era homolog OS=Rickettsia bell... [more]
ERA_BRUME9.438e-1333.02GTP-binding protein era homolog OS=Brucella melite... [more]
ERA_RICFE1.233e-1232.17GTP-binding protein era homolog OS=Rickettsia feli... [more]
ERA_RICBR1.233e-1232.08GTP-binding protein era homolog OS=Rickettsia bell... [more]
ERA_MARMM1.610e-1239.33GTP-binding protein era homolog OS=Maricaulis mari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70H07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70H07-O14-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676588 ID=CX676588; Name=CX676588; organism=Citrus sinensis; type=EST; length=847bp
TATGACATCGGGACTGAAGGGTGCTGGATTAAAAGCTCTTACTCAATATT
TGATGGAGCAGGCATGTCTTCATCATCTTCACTTCATCTTGATGATATGA
GTGTGTGTGTTTTTATGTGGTGTTTCTGGTATATGATTATAATGCAGTTT
CTTTTAAATTTTTCTAGGTCTTTGACTAGTTTCTAATCTTAAGCAACAAA
TGTCTGCTCTTCTAAATCATCATCCTGACTCTGGCTATTTGATGGCTTTT
TATGCTTAGGCAGTTCAAAGACCTTGGTCTGAAGATCCATTAACCATGAG
TGAAGAAGTTATGAAGAACATTTCATTGGAAGTCGTCCGGGAGAGGTTAC
TGGACCATGTACATCAGGAAATTCCTTACAGTATTGAACATCGGTTGATA
GACTGGAAGGATTTACGAGATGGCTCCCTTAGGATTGAACAACACTTGAT
TACCAACAAGCTAAGCCAGCGAAAAATTCTCGTGGGGAAGAATGGCTCTA
AAATAGGGAGAATAGGTGTTGAAGCTAATGAAGAGCTAAGGTCCATCTTT
AAAAGGGATGTGCATCTAATCCTCCAGGTTAGACTAAAGACTTAAGTGAT
GGGCTCAACAAATGAATCAATTTTTGAGAAGTGCTTCATCTCGCACTGTA
CCATCTGATTGTGTATATATGAAGAAGGCCTATCAGGTGCACTTCTACGG
TAAACATCTGGTTTCTTTCCCTTGCAAAGGTTTTTTAGAGTTGAGCTTTA
ATTCAGGAGTTTAAATTGGACACCTAGGCGTTGTAACACAAATGCCCCAA
GAGCCCCTTATTTTAGGGGGGGAAAAAATCTGCATTATCTTTTCTTG
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