CX676588

Overview
NameCX676588
Unique NameCX676588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_CAUCR (GTP-binding protein era homolog OS=Caulobacter crescentus GN=era PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 36/106 (33.96%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW       ++   + ++ E+ RE++   VH+E+PY+       +++ +DGS+RIEQ ++  +  QR I++GK G  +  IG  + EEL  I  R VHL L V++K
Sbjct:  192 PWLYPEDQTADLPARLLAAEITREKVYLRVHEELPYAATVETTAFEERKDGSVRIEQTILVEREGQRVIVIGKGGQTLKWIGQASREELCDILDRKVHLFLHVKVK 297          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_CAUCN (GTP-binding protein era homolog OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=era PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 36/106 (33.96%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW       ++   + ++ E+ RE++   VH+E+PY+       +++ +DGS+RIEQ ++  +  QR I++GK G  +  IG  + EEL  I  R VHL L V++K
Sbjct:  192 PWLYPEDQTADLPARLLAAEITREKVYLRVHEELPYAATVETTAFEERKDGSVRIEQTILVEREGQRVIVIGKGGQTLKWIGQASREELCDILDRKVHLFLHVKVK 297          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_ERYLH (GTP-binding protein era homolog OS=Erythrobacter litoralis (strain HTCC2594) GN=era PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  275 WSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT*VMGSTNESIFEK 631
            + ED ++ + E +  ++ E+ RE+L   +H+E+PY    R   +K   DGSL I Q ++  + SQR I++GK GS+I  IG  A ++L  I    VHL L V++      + N+ +FE+
Sbjct:  183 YPEDQVSDASERL--LATEITREQLYQQLHEELPYDSAVRPEQYKQRPDGSLEIHQQIVIARESQRPIVLGKGGSRIKAIGEAARKDLSEILGVTVHLFLHVKVDE--KWAENKEVFEE 297          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_DINSH (GTP-binding protein era homolog OS=Dinoroseobacter shibae (strain DFL 12) GN=era PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW      +++  ++ I+ E+ RE+L   +HQE+PY +     +W++ +DGS+RI+Q +   +   + IL+G  G     +   A EEL     R VHL LQV+++
Sbjct:  181 PWMYPEDQIADVPLRMIAAEITREKLTLRLHQELPYQLTVETENWEERKDGSVRIDQVVYVMRDGHKGILLGHKGETAKAVSKAAREELVEFLGRKVHLFLQVKVR 286          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERAL_MOUSE (GTP-binding protein era homolog OS=Mus musculus GN=Eral1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 33/105 (31.43%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 586
            PW      ++ +  + I    +RE+LL+++ +E+PY ++ + + W++   G L I+Q+L+  K S  +IL+G+ G  I +I  E   +L  IF  DV + L V+L
Sbjct:  331 PWEFHSGVLTSQTPEEICANKIREKLLEYLPEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGLLISQIAQEVGRDLMDIFHCDVLIRLSVKL 435          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RICTY (GTP-binding protein era homolog OS=Rickettsia typhi GN=era PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 34/105 (32.38%), Postives = 66/105 (62.86%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 586
            PW      ++   M+ I+ E+ RE+L  ++ QE+PY +  +   +++L+D S++I Q ++ ++ S + I++GKNG+KI  IGV++  ++  +F   VHL L V++
Sbjct:  175 PWLYADDDITNLPMRFIAAEITREQLFLNLQQELPYKLTVQTEKFEELKDKSIKINQVIVISRESYKAIILGKNGTKIKDIGVKSRIQMEQLFCVPVHLFLFVKV 279          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RICPR (GTP-binding protein era homolog OS=Rickettsia prowazekii GN=era PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 34/105 (32.38%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 586
            PW      ++   M+ I+ E+ RE+L  ++ QE+PY +  +   +++L+D S++I Q ++ ++ + + I++GKNG+KI  IGV++  +L   F   VHL L V++
Sbjct:  175 PWLYADDDITNLPMRFIAAEITREQLFLNLQQELPYKLTVQTEKFEELKDKSIKINQVIVISRENYKAIILGKNGAKIKDIGVKSRVQLEQFFCVPVHLFLFVKV 279          
The following BLAST results are available for this feature:
BLAST of CX676588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ERA_CAUCR4.684e-1233.96GTP-binding protein era homolog OS=Caulobacter cre... [more]
ERA_CAUCN4.684e-1233.96GTP-binding protein era homolog OS=Caulobacter cre... [more]
ERA_ERYLH7.990e-1234.45GTP-binding protein era homolog OS=Erythrobacter l... [more]
ERA_DINSH2.325e-1132.08GTP-binding protein era homolog OS=Dinoroseobacter... [more]
ERAL_MOUSE3.036e-1131.43GTP-binding protein era homolog OS=Mus musculus GN... [more]
ERA_RICTY5.179e-1132.38GTP-binding protein era homolog OS=Rickettsia typh... [more]
ERA_RICPR8.834e-1132.38GTP-binding protein era homolog OS=Rickettsia prow... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70H07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70H07-O14-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676588 ID=CX676588; Name=CX676588; organism=Citrus sinensis; type=EST; length=847bp
TATGACATCGGGACTGAAGGGTGCTGGATTAAAAGCTCTTACTCAATATT
TGATGGAGCAGGCATGTCTTCATCATCTTCACTTCATCTTGATGATATGA
GTGTGTGTGTTTTTATGTGGTGTTTCTGGTATATGATTATAATGCAGTTT
CTTTTAAATTTTTCTAGGTCTTTGACTAGTTTCTAATCTTAAGCAACAAA
TGTCTGCTCTTCTAAATCATCATCCTGACTCTGGCTATTTGATGGCTTTT
TATGCTTAGGCAGTTCAAAGACCTTGGTCTGAAGATCCATTAACCATGAG
TGAAGAAGTTATGAAGAACATTTCATTGGAAGTCGTCCGGGAGAGGTTAC
TGGACCATGTACATCAGGAAATTCCTTACAGTATTGAACATCGGTTGATA
GACTGGAAGGATTTACGAGATGGCTCCCTTAGGATTGAACAACACTTGAT
TACCAACAAGCTAAGCCAGCGAAAAATTCTCGTGGGGAAGAATGGCTCTA
AAATAGGGAGAATAGGTGTTGAAGCTAATGAAGAGCTAAGGTCCATCTTT
AAAAGGGATGTGCATCTAATCCTCCAGGTTAGACTAAAGACTTAAGTGAT
GGGCTCAACAAATGAATCAATTTTTGAGAAGTGCTTCATCTCGCACTGTA
CCATCTGATTGTGTATATATGAAGAAGGCCTATCAGGTGCACTTCTACGG
TAAACATCTGGTTTCTTTCCCTTGCAAAGGTTTTTTAGAGTTGAGCTTTA
ATTCAGGAGTTTAAATTGGACACCTAGGCGTTGTAACACAAATGCCCCAA
GAGCCCCTTATTTTAGGGGGGGAAAAAATCTGCATTATCTTTTCTTG
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